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Commit 3790e7da authored by Floreal Cabanettes's avatar Floreal Cabanettes
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Fix build pop script

parent 66b4bcfc
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......@@ -226,11 +226,11 @@ print("GENERATE RANDOM READS FOR EACH INDIVIDUAL FROM GENOME...\n")
# Generate reads for all individuals:
if not haploid:
cmd = str("{4}pirs/pirs simulate -z -x {3} -d -B {4}pirs/Profiles/Base-Calling_Profiles/humNew.PE100.matrix.gz "
"-I {4}pirs/Profiles/InDel_Profiles/phixv2.InDel.matrix -l {5} -m {6} -v {7}"
"-I {4}pirs/Profiles/InDel_Profiles/phixv2.InDel.matrix -l {5} -m {6} -v {7} "
"-G {4}pirs/Profiles/GC-depth_Profiles/humNew.gcdep_100.dat -o {0} {1} {2}")
else:
cmd = str("{4}pirs/pirs simulate -z -x {3} -B {4}pirs/Profiles/Base-Calling_Profiles/humNew.PE100.matrix.gz "
"-I {4}pirs/Profiles/InDel_Profiles/phixv2.InDel.matrix -l {5} -m {6} -v {7}"
"-I {4}pirs/Profiles/InDel_Profiles/phixv2.InDel.matrix -l {5} -m {6} -v {7} "
"-G {4}pirs/Profiles/GC-depth_Profiles/humNew.gcdep_100.dat -o {0} {1}")
for i in range(1, nb_inds+1):
prefix = os.path.join(output_dir, "INDIV_" + str(i))
......
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