Commits · 6427b4bd1216e6200d223874374e83c637ea9ffe · SVdetection / popsim

Jun 22, 2017
- Add init function to call build_pop as a module · 6427b4bd
  Floreal Cabanettes authored 7 years ago
  
  6427b4bd
Jun 21, 2017
- Improvements · dade90a4
  Floreal Cabanettes authored 7 years ago
  
  dade90a4
- Add chromosomes infos to confirmation task · 49f666d0
  Floreal Cabanettes authored 7 years ago
  
  49f666d0
- Add parallelisation for deletions positionning · 1da11cd1
  Floreal Cabanettes authored 7 years ago
  
  1da11cd1
- Some improvements · e4a96663
  Floreal Cabanettes authored 7 years ago
  
  e4a96663
Jun 20, 2017
- Remove unused import · 0465abac
  Floreal Cabanettes authored 7 years ago
  
  0465abac
- Add missing short options · d2be5ec3
  Floreal Cabanettes authored 7 years ago
  
  d2be5ec3
- Add threads for pirs · 767f84e9
  Floreal Cabanettes authored 7 years ago
  
  767f84e9
- Remove vawk and fix variants simulator · f030a6d0
  Floreal Cabanettes authored 7 years ago
  
  f030a6d0
- Replace vawk by python code · 26ee73b9
  Floreal Cabanettes authored 7 years ago
  
  26ee73b9
- Generate deletions positions and size with our algorithm instead of SVSim · a60719b5
  Floreal Cabanettes authored 7 years ago
  
  a60719b5
Jun 15, 2017
- Complete README · 38a86042
  Floreal Cabanettes authored 7 years ago
  
  38a86042
- Add stripplots option · dd063081
  Floreal Cabanettes authored 7 years ago
  
  dd063081
- Build figures using python without R · 0e4ecb7c
  Floreal Cabanettes authored 7 years ago
  
  0e4ecb7c
- Fix main function · e045a8a6
  Floreal Cabanettes authored 7 years ago
  
  e045a8a6
Jun 13, 2017
- Fix code · 4ad4b4c6
  Floreal Cabanettes authored 7 years ago
  
  4ad4b4c6
- xlsxwriter as optional dependency · 358f6d4c
  Floreal Cabanettes authored 7 years ago
  
  358f6d4c
Jun 09, 2017
- Remove unused check · 62de38ec
  Floreal Cabanettes authored 7 years ago
  
  62de38ec
- Exit if output dir exists · 2e6ff9d5
  Floreal Cabanettes authored 7 years ago
  
  2e6ff9d5
- refactoring · 11f5eaa5
  Floreal Cabanettes authored 7 years ago
  
  11f5eaa5
- refactoring · 139946d6
  Floreal Cabanettes authored 7 years ago
  
  139946d6
- Refactoring of build_pop script · fa876d5b
  Floreal Cabanettes authored 7 years ago
  
  fa876d5b
Jun 07, 2017
- Update requirements · 8d6c7883
  Floreal Cabanettes authored 7 years ago
  
  8d6c7883
May 30, 2017
- Update README · fb6dac8b
  Floreal Cabanettes authored 7 years ago
  
  fb6dac8b
May 17, 2017
- Fix if no genotype was given · 99217199
  Floreal Cabanettes authored 7 years ago
  
  99217199
- simplified sort · 35108d71
  Thomas Faraut authored 7 years ago
  
  35108d71
May 05, 2017
- Use mkdtemp to create temp dir + add try-except to fix bug on missing files · 3ef5dbea
  Floreal Cabanettes authored 7 years ago
  
  3ef5dbea
Apr 20, 2017
- Add colors to boxplots · b81d3288
  Floreal Cabanettes authored 7 years ago
  
  b81d3288
Apr 19, 2017
- merge all quality PDFs in a single one, with bookmarks · 7f2d935d
  Floreal Cabanettes authored 7 years ago
  
  7f2d935d
- Fix figures for full NA values · d1286c6e
  Floreal Cabanettes authored 7 years ago
  
  d1286c6e
- Add haploid support to R figures · 0fb175af
  Floreal Cabanettes authored 7 years ago
  
  0fb175af
- Fix build pop script · 3790e7da
  Floreal Cabanettes authored 7 years ago
  
  3790e7da
- Fix build pop for diploids · 66b4bcfc
  Floreal Cabanettes authored 7 years ago
  
  66b4bcfc
- Fix python syntax · 0b04ea0a
  Floreal Cabanettes authored 7 years ago
  
  0b04ea0a
- Add options to reads generation · 9d7bc75d
  Floreal Cabanettes authored 7 years ago
  
  9d7bc75d
Apr 14, 2017
- svreader as submodule (lib) · 23f09bd7
  Floreal Cabanettes authored 7 years ago
  
  23f09bd7
Apr 12, 2017
- Add precision and recall graphs · 812cdbec
  Floreal Cabanettes authored 7 years ago
  
  812cdbec
Apr 10, 2017
- Merge graphics by tool + png -> pdf · 128e9145
  Floreal Cabanettes authored 7 years ago
  
  128e9145
- Add build of R figures · b855a687
  Floreal Cabanettes authored 7 years ago
  
  b855a687
Apr 07, 2017
- Fix genotypes for orphans records · 35a6b63b
  Floreal Cabanettes authored 7 years ago
  
  35a6b63b

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