Commits · 436fcebec52b6119b8321bf1cbfee16a0c44f545 · SVdetection / popsim

Apr 11, 2018
- Filter rules file to only add the variant lines · 436fcebe
  Floreal Cabanettes authored 6 years ago
  
  436fcebe
Apr 04, 2018
- Stop if jupyter fails · 86726ba1
  Floreal Cabanettes authored 6 years ago
  
  86726ba1
Mar 30, 2018
- Exit program if jupyter notebook fails · cf845d82
  Floreal Cabanettes authored 6 years ago
  
  cf845d82
- Fix template URL · 66f9eced
  Floreal Cabanettes authored 6 years ago
  
  66f9eced
- Fix template + refactor notebook · b656c6d7
  Floreal Cabanettes authored 6 years ago
  
  b656c6d7
Mar 29, 2018
- Some fixes · 955ba169
  Floreal Cabanettes authored 6 years ago
  
  955ba169
- Replace os.popen by os.system · 453204ef
  Floreal Cabanettes authored 6 years ago
  
  453204ef
- Fix code · 64dabeeb
  Floreal Cabanettes authored 6 years ago
  
  64dabeeb
- Fix import · 2715afb3
  Floreal Cabanettes authored 6 years ago
  
  2715afb3
- Add build of jupyter notebook summary · d2c794ae
  Floreal Cabanettes authored 6 years ago
  
  d2c794ae
- rename lib svlib · fa0bb69a
  Floreal Cabanettes authored 6 years ago
  
  fa0bb69a
Mar 26, 2018
- Fix paths · 794af239
  Floreal Cabanettes authored 7 years ago
  
  794af239
- Replace output prefix by output folder · 2aec4315
  Floreal Cabanettes authored 7 years ago
  
  2aec4315
- Fix argument · e2fab6d8
  Floreal Cabanettes authored 7 years ago
  
  e2fab6d8
- Make type argument required · 48899c05
  Floreal Cabanettes authored 7 years ago
  
  48899c05
- Fix argparse · 8cac68e8
  Floreal Cabanettes authored 7 years ago
  
  8cac68e8
- Ad type of variant to build_results script · 6e6d44c1
  Floreal Cabanettes authored 7 years ago
  
  6e6d44c1
- Replace arguments file by a file containing list of files · 0f6750eb
  Floreal Cabanettes authored 7 years ago
  
  0f6750eb
- Make build_results working with the new snk pipeline · 3437a5dd
  Floreal Cabanettes authored 7 years ago
  
  3437a5dd
Oct 26, 2017
- Build results/figures: genotype and filtered results ignored · 0ac88db1
  Floreal Cabanettes authored 7 years ago
  
  0ac88db1
Sep 15, 2017
- Some fixes, and set ylim 0-100 for recall figure · 9203fae4
  Floreal Cabanettes authored 7 years ago
  
  9203fae4
Sep 12, 2017
- Change None genotype to be N/N · 06baa18f
  Floreal Cabanettes authored 7 years ago
  
  06baa18f
Sep 11, 2017
- Allow several filter and genotype files · 09249c14
  Floreal Cabanettes authored 7 years ago
  
  09249c14
Aug 25, 2017
- Fix genotypes in build results · 2c7499b4
  Floreal Cabanettes authored 7 years ago
  
  2c7499b4
Jul 11, 2017
- Update popsim to the new pirs version · a2dd8a72
  Floreal Cabanettes authored 7 years ago
  
  a2dd8a72
Jun 30, 2017
- Replace vcf.VCFReader by pysam.VariantFile · 4b510898
  Floreal Cabanettes authored 7 years ago
  
  4b510898
Jun 23, 2017
- Fix init defaults · bbce30a9
  Floreal Cabanettes authored 7 years ago
  
  bbce30a9
- Fix typo · 85a45270
  Floreal Cabanettes authored 7 years ago
  
  85a45270
- Make build_results compatible with Python 3.4 + code refactoring · 637271b2
  Floreal Cabanettes authored 7 years ago
  
  637271b2
Jun 22, 2017
- Fix chromosoome for orphans · e40c74b6
  Floreal Cabanettes authored 7 years ago
  
  e40c74b6
Jun 20, 2017
- Replace vawk by python code · 26ee73b9
  Floreal Cabanettes authored 7 years ago
  
  26ee73b9
Jun 15, 2017
- Fix main function · e045a8a6
  Floreal Cabanettes authored 7 years ago
  
  e045a8a6
Jun 13, 2017
- Fix code · 4ad4b4c6
  Floreal Cabanettes authored 7 years ago
  
  4ad4b4c6
- xlsxwriter as optional dependency · 358f6d4c
  Floreal Cabanettes authored 7 years ago
  
  358f6d4c
May 17, 2017
- Fix if no genotype was given · 99217199
  Floreal Cabanettes authored 7 years ago
  
  99217199
- simplified sort · 35108d71
  Thomas Faraut authored 7 years ago
  
  35108d71
Apr 14, 2017
- svreader as submodule (lib) · 23f09bd7
  Floreal Cabanettes authored 7 years ago
  
  23f09bd7
Apr 10, 2017
- Add build of R figures · b855a687
  Floreal Cabanettes authored 7 years ago
  
  b855a687
Apr 07, 2017
- Fix genotypes for orphans records · 35a6b63b
  Floreal Cabanettes authored 7 years ago
  
  35a6b63b
- Make Excel file optional · 9309b55b
  Floreal Cabanettes authored 7 years ago
  
  9309b55b

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