Make Excel file optional

build_results.py

@@ -56,6 +56,7 @@ description: Merge SV based on reciprocal overlap")
     parser.add_argument('--left_precision',  type=int, default=-1, help='left breakpoint precision')
     parser.add_argument('--right_precision',  type=int, default=-1, help='right breakpoint precision')
     parser.add_argument('-o', '--output', type=str, default="results", help='output prefix')
+    parser.add_argument('--no-xls', action='store_const', const=True, default=False, help='Do not build Excel file')
     # parse the arguments
     args = parser.parse_args()
 
@@ -771,8 +772,9 @@ def main():
         i += 1
 
     # Create document:
-    create_xls_document(args, headers, filtered_records is not None, nb_records, nb_inds, cells, cells_gt, cells_gq,
-                        max_col_len)
+    if not args.no_xls:
+        create_xls_document(args, headers, filtered_records is not None, nb_records, nb_inds, cells, cells_gt, cells_gq,
+                            max_col_len)
 
     # Create CSV files:
     create_tsv_file(args.output + "_sv_per_tools.tsv", headers, cells,
@@ -796,7 +798,10 @@ def main():
     print(str(nb_records) + " Results found")
     print(str(orphans) + " False Positive")
     print("")
-    print("Results saved in :\n\t- " + args.output + ".xslx")
+    if not args.no_xls:
+        print("Results saved in :\n\t- " + args.output + ".xslx")
+    else:
+        print("Results:")
     print("")
     print("TSV files:")
     print("\t- " + args.output + "_sv_per_tools.tsv")