Commits · 3a817c8b952b74d2056a9ee41be30554c746f7df · SVdetection / popsim

Jun 06, 2018
- Fix check min size value · 3a817c8b
  Floreal Cabanettes authored 6 years ago
  
  3a817c8b
May 31, 2018
- Re-enable to use a file with genotypes already done · 027da130
  Floreal Cabanettes authored 6 years ago
  
  027da130
Apr 09, 2018
- Add missing print · e0bde431
  Floreal Cabanettes authored 6 years ago
  
  e0bde431
Apr 04, 2018
- Fix code · 792f5079
  Floreal Cabanettes authored 6 years ago
  
  792f5079
- Add max try parameter + show max of variants when tries failed · 98062ab5
  Floreal Cabanettes authored 6 years ago
  
  98062ab5
Mar 29, 2018
- Refactoring · 57d82513
  Floreal Cabanettes authored 7 years ago
  
  57d82513
- rename lib svlib · fa0bb69a
  Floreal Cabanettes authored 7 years ago
  
  fa0bb69a
Mar 23, 2018
- Fix printer · 21e1c0c4
  Floreal Cabanettes authored 7 years ago
  
  21e1c0c4
- Fix code · 1d8bbbcd
  Floreal Cabanettes authored 7 years ago
  
  1d8bbbcd
- If quiet, save confirm in txt file · c9fe9ddf
  Floreal Cabanettes authored 7 years ago
  
  c9fe9ddf
- Fix for pysam 0.14: sort vcf file · eb624401
  Floreal Cabanettes authored 7 years ago
  
  eb624401
Nov 03, 2017
- Fix a lot of bugs · f0bb4653
  Floreal Cabanettes authored 7 years ago
  
  f0bb4653
Nov 02, 2017
- Fix inversions: reverse complement · 86c8c0be
  Floreal Cabanettes authored 7 years ago
  
  86c8c0be
Oct 26, 2017
- Add inversions simulations · 6737fa62
  Floreal Cabanettes authored 7 years ago
  
  6737fa62
Jul 11, 2017
- Allow to input genotype file with deletions already set · 0b79f4ea
  Floreal Cabanettes authored 7 years ago
  
  0b79f4ea
- Update popsim to the new pirs version · a2dd8a72
  Floreal Cabanettes authored 7 years ago
  
  a2dd8a72
Jun 30, 2017
- Fix log file to a file instead of stdout/err · 0341b710
  Floreal Cabanettes authored 7 years ago
  
  0341b710
Jun 29, 2017
- Returns exit status · c295497c
  Floreal Cabanettes authored 7 years ago
  
  c295497c
- Remove ungzipped vcf file · 80e9067d
  Floreal Cabanettes authored 7 years ago
  
  80e9067d
- Add minimum number of deletions to generate parameter · b45bc530
  Floreal Cabanettes authored 7 years ago
  
  b45bc530
- Prevent deletions to be localized inside N stretches · f3598738
  Floreal Cabanettes authored 7 years ago
  
  f3598738
Jun 23, 2017
- rename erase_output force_outputdir · aa2d6331
  Floreal Cabanettes authored 7 years ago
  
  aa2d6331
Jun 22, 2017
- Update build pop to enable stdout/err redirecting · 74657bda
  Floreal Cabanettes authored 7 years ago
  
  74657bda
- Add init function to call build_pop as a module · 6427b4bd
  Floreal Cabanettes authored 7 years ago
  
  6427b4bd
Jun 21, 2017
- Add chromosomes infos to confirmation task · 49f666d0
  Floreal Cabanettes authored 7 years ago
  
  49f666d0
- Add parallelisation for deletions positionning · 1da11cd1
  Floreal Cabanettes authored 7 years ago
  
  1da11cd1
- Some improvements · e4a96663
  Floreal Cabanettes authored 7 years ago
  
  e4a96663
Jun 20, 2017
- Remove unused import · 0465abac
  Floreal Cabanettes authored 7 years ago
  
  0465abac
- Add missing short options · d2be5ec3
  Floreal Cabanettes authored 7 years ago
  
  d2be5ec3
- Add threads for pirs · 767f84e9
  Floreal Cabanettes authored 7 years ago
  
  767f84e9
- Generate deletions positions and size with our algorithm instead of SVSim · a60719b5
  Floreal Cabanettes authored 7 years ago
  
  a60719b5
Jun 09, 2017
- Remove unused check · 62de38ec
  Floreal Cabanettes authored 7 years ago
  
  62de38ec
- Exit if output dir exists · 2e6ff9d5
  Floreal Cabanettes authored 7 years ago
  
  2e6ff9d5
- refactoring · 11f5eaa5
  Floreal Cabanettes authored 7 years ago
  
  11f5eaa5
- refactoring · 139946d6
  Floreal Cabanettes authored 7 years ago
  
  139946d6
- Refactoring of build_pop script · fa876d5b
  Floreal Cabanettes authored 7 years ago
  
  fa876d5b
May 05, 2017
- Use mkdtemp to create temp dir + add try-except to fix bug on missing files · 3ef5dbea
  Floreal Cabanettes authored 7 years ago
  
  3ef5dbea
Apr 19, 2017
- Fix build pop script · 3790e7da
  Floreal Cabanettes authored 7 years ago
  
  3790e7da
- Fix build pop for diploids · 66b4bcfc
  Floreal Cabanettes authored 7 years ago
  
  66b4bcfc
- Fix python syntax · 0b04ea0a
  Floreal Cabanettes authored 7 years ago
  
  0b04ea0a