From 3790e7da275900ad333d83c7248111dd4d884eaf Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Flor=C3=A9al=20Cabanettes?= <floreal.cabanettes@inra.fr>
Date: Wed, 19 Apr 2017 16:22:38 +0200
Subject: [PATCH] Fix build pop script
---
build_pop.py | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/build_pop.py b/build_pop.py
index 845660c..1528dda 100755
--- a/build_pop.py
+++ b/build_pop.py
@@ -226,11 +226,11 @@ print("GENERATE RANDOM READS FOR EACH INDIVIDUAL FROM GENOME...\n")
# Generate reads for all individuals:
if not haploid:
cmd = str("{4}pirs/pirs simulate -z -x {3} -d -B {4}pirs/Profiles/Base-Calling_Profiles/humNew.PE100.matrix.gz "
- "-I {4}pirs/Profiles/InDel_Profiles/phixv2.InDel.matrix -l {5} -m {6} -v {7}"
+ "-I {4}pirs/Profiles/InDel_Profiles/phixv2.InDel.matrix -l {5} -m {6} -v {7} "
"-G {4}pirs/Profiles/GC-depth_Profiles/humNew.gcdep_100.dat -o {0} {1} {2}")
else:
cmd = str("{4}pirs/pirs simulate -z -x {3} -B {4}pirs/Profiles/Base-Calling_Profiles/humNew.PE100.matrix.gz "
- "-I {4}pirs/Profiles/InDel_Profiles/phixv2.InDel.matrix -l {5} -m {6} -v {7}"
+ "-I {4}pirs/Profiles/InDel_Profiles/phixv2.InDel.matrix -l {5} -m {6} -v {7} "
"-G {4}pirs/Profiles/GC-depth_Profiles/humNew.gcdep_100.dat -o {0} {1}")
for i in range(1, nb_inds+1):
prefix = os.path.join(output_dir, "INDIV_" + str(i))
--
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