Commits · eea59793f1cf07d6c2877af67c13c5f29ca63c9e · SVdetection / cnvpipelines

Dec 20, 2019
- jupyter for concatenate detection · b1994783
  Mathieu Charles authored 5 years ago
  
  b1994783
Nov 26, 2019
- new annotation · c1c226a5
  Thomas Faraut authored 5 years ago
  
  c1c226a5
- new annotation · 22b70286
  Thomas Faraut authored 5 years ago
  
  22b70286
- new annotation · 47f2113f
  Thomas Faraut authored 5 years ago
  
  47f2113f
Nov 21, 2019
- add keyword ancient in refbundle and add libiconv in environment.yaml · 288d5ac0
  Mathieu Charles authored 5 years ago
  
  288d5ac0
Oct 04, 2019
- nb_start_batch no set to 1 for mergebatches · 53cf7062
  Thomas Faraut authored 5 years ago
  
  53cf7062
Sep 27, 2019
- - help is now provided when cnvpipelines.py script is launched without arguments (commands) · 685ca543
  Thomas Faraut authored 5 years ago
  
  - clean and soft-clean now works with rerun
  685ca543
Sep 23, 2019
- lumpy now requests 24Gb of memory · 3d3c9dc5
  Thomas Faraut authored 5 years ago
  
  3d3c9dc5
Sep 10, 2019
- megebatches functionnal · 12125ec3
  Thomas Faraut authored 5 years ago
  
  12125ec3
- Preparing for simulation work-flow. · 7fe0baea
  Thomas Faraut authored 5 years ago
  
  Remaining problem commes from reference sequence "reference.fasta" absent at the beginning of the workflow.
  7fe0baea
Sep 03, 2019
- megebatches functionnal · 9fe41545
  Thomas Faraut authored 5 years ago
  
  9fe41545
Aug 26, 2019

Preparing for simulation work-flow. · d7d57d96

Thomas Faraut authored 5 years ago

Remaining problem commes from reference sequence "reference.fasta" absent at the beginning of the workflow.

d7d57d96

Jul 11, 2019
- removing termcolor · ce136797
  Thomas Faraut authored 5 years ago
  
  ce136797
- a functional version · 94a7830d
  Thomas Faraut authored 5 years ago
  
  94a7830d
Jul 08, 2019
- new installation procedure · b5c5e280
  Thomas Faraut authored 5 years ago
  
  b5c5e280
Jul 05, 2019
- buid_pop -> build_variant_pop · c3548d4d
  Thomas Faraut authored 5 years ago
  
  c3548d4d
May 27, 2019
- some more explicit messages. Correcting positions for gaps · 8c8bba97
  Thomas Faraut authored 5 years ago
  
  8c8bba97
Feb 05, 2019
- Duplication support in simulation;Creation of the sample.list containing all... · c1c72ff8
  Mathieu Charles authored 6 years ago
  
  Duplication support in simulation;Creation of the sample.list containing all samples, additionnaly to sample.list.# for batch
  c1c72ff8
Dec 14, 2018
- bug correction · a6854300
  Thomas Faraut authored 6 years ago
  
  a6854300
Oct 23, 2018
- removing self._rerun_tools(tools) · b4182d5e
  Thomas Faraut authored 6 years ago
  
  b4182d5e
Aug 22, 2018
- Allow several RG tags if all have the same SM flag · 9a475021
  Floreal Cabanettes authored 6 years ago
  
  9a475021
- Fix delete of wdir on dry run for detection pipeline · 1074a0f9
  Floreal Cabanettes authored 6 years ago
  
  1074a0f9
- Remove done files at run detection twice · 5f725e3e
  Floreal Cabanettes authored 6 years ago
  
  5f725e3e
- Fix python code · bb7923b3
  Floreal Cabanettes authored 6 years ago
  
  bb7923b3
Aug 20, 2018
- Fix message · 5fc613df
  Floreal Cabanettes authored 6 years ago
  
  5fc613df
- Fix error code · ed416645
  Floreal Cabanettes authored 6 years ago
  
  ed416645
- Disallow run twice with a different batch size · c83ba8bd
  Floreal Cabanettes authored 6 years ago
  
  c83ba8bd
- Run a job twice not allowed for simulation. Run a job twice check wf_type compatibility · 879faae0
  Floreal Cabanettes authored 6 years ago
  
  879faae0
Aug 17, 2018
- Run in an existing working dir now just erase config and keep other files · 8f9f2efd
  Floreal Cabanettes authored 6 years ago
  
  8f9f2efd
Aug 08, 2018
- Remove mCNV for default launch · a554a2c4
  Floreal Cabanettes authored 6 years ago
  
  a554a2c4
Aug 07, 2018
- Simulation: allow to use custom frequencies for variants · 0393a803
  Floreal Cabanettes authored 6 years ago
  
  0393a803
Jul 30, 2018
- Fix snakemake bug: change date of reference file · 0cddc75d
  Floreal Cabanettes authored 6 years ago
  
  0cddc75d
- Fix bug on simulation if no genomestrip in tools · 5fee3a25
  Floreal Cabanettes authored 6 years ago
  
  5fee3a25
- Remove nstretch file from popsim parameters · a4599c24
  Floreal Cabanettes authored 6 years ago
  
  a4599c24
Jul 23, 2018
- Add reason of each executed rule option to the wrapper (2) · 1deda6e2
  Floreal Cabanettes authored 6 years ago
  
  1deda6e2
- Fix reason option · 82b288ee
  Floreal Cabanettes authored 6 years ago
  
  82b288ee
- Add reason of each executed rule option to the wrapper · 10f54aee
  Floreal Cabanettes authored 6 years ago
  
  10f54aee
Jul 18, 2018
- Fix simulation: if proba of inversion is 0, set min inversion to 0 · 6f7c7f5f
  Floreal Cabanettes authored 6 years ago
  
  6f7c7f5f
- Add check valid for simulation · 4911f1df
  Floreal Cabanettes authored 6 years ago
  
  4911f1df
- Fix simulation workflow · bbfbaf74
  Floreal Cabanettes authored 6 years ago
  
  bbfbaf74

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