Remove done files at run detection twice

cnvpipelines.py

@@ -703,6 +703,10 @@ class CnvPipeline:
                     return False
             else:
                 self._rerun_tools(new_tools=tools)
+                # Remove done files
+                done_files = glob(os.path.join(self.wdir, ".done*"))
+                for done_f in done_files:
+                    os.remove(done_f)
                 if self.config_data["batches"] != batches:
                     print("Error: rerun with a different number of batch size not allowed. Exiting...", file=sys.stderr)
                     exit(1)