diff --git a/snakecnv/align.snk b/snakecnv/align.snk index f610c4977526daafa676394f4db437c0aa6a2e48..d8067cc7b08c64257b3172d2a7698540586f6a5e 100644 --- a/snakecnv/align.snk +++ b/snakecnv/align.snk @@ -69,8 +69,8 @@ rule bamindex: threads: 1 log: - stdout = "logs/mapindex_{sample}.o", - stderr = "logs/mapindex_{sample}.e" + stdout = "logs/mapindex_{sample}_{folder}.o", + stderr = "logs/mapindex_{sample}_{folder}.e" shell: "samtools index {input}; " "samtools flagstat {input} > {output.summary}"