Commits · a21a8ac93b0dcc8a06341da3831d60b81129bdc8 · PAPPSO / i2MassChroQ · GitLab

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A compter du 1er avril, attention à vos pipelines : Nouvelles limitations de Docker Hub

Opération de maintenance mensuelle - Mise à jour de Gitlab - Mardi 15 Avril entre 7h00 et 8h30

Nov 26, 2013
- convert SVG files with inhouse script · a21a8ac9
  Olivier Langella authored 11 years ago
  
  a21a8ac9
Nov 19, 2013
- new targets to build Javadoc and to run X!TandemPipeline directly · db1d90ab
  Olivier Langella authored 11 years ago
  
  db1d90ab
- date modified · 95b69b8d
  Olivier Langella authored 11 years ago
  
  95b69b8d
- ignore latex temporary files · aa440aea
  Olivier Langella authored 11 years ago
  
  aa440aea
Nov 16, 2013
- latex images are automatically converted : png replaced by svg · d9df045a
  Olivier Langella authored 11 years ago
  
  tex document use image files without extensions
  d9df045a
Nov 15, 2013
- new debian package build : it produces pdf on the fly and a separate doc package · bdebcac1
  Olivier Langella authored 11 years ago
  
  bdebcac1
- first attempt to generate pdf doc file with cmake from sources · ccc3c6be
  Olivier Langella authored 11 years ago
  
  ccc3c6be
Nov 13, 2013
- standard deviation typo fixed · 4feca664
  Olivier Langella authored 11 years ago
  
  4feca664
- xtandempipeline (3.3.1-29) wheezy; · 837d7b96
  Olivier Langella authored 11 years ago
  
  837d7b96
- spectre output report modified to display proteins by subgroups · 3ea06d58
  Olivier Langella authored 11 years ago
  
  3ea06d58
- fix png svg substitution · 44d44b39
  Olivier Langella authored 11 years ago
  
  44d44b39
- svg before png to export peptide spectrum · 13a93835
  Olivier Langella authored 11 years ago
  
  13a93835
- the "save project" item is enabled when there no current XPIP file : this... · a15d50c9
  Olivier Langella authored 11 years ago
  
  the "save project" item is enabled when there no current XPIP file : this launches the save as action
  a15d50c9
- number of samples and groups are updated in the main windows when applying modifications · c6989716
  Olivier Langella authored 11 years ago
  
  c6989716
Nov 08, 2013
- xtandempipeline (3.3.1-28) wheezy; · f4eead36
  Olivier Langella authored 11 years ago
  
  f4eead36
Nov 07, 2013
- cmake configuration modified to build on i386 too · 7f5702c4
  Olivier Langella authored 11 years ago
  
  7f5702c4
Nov 05, 2013
- xtandempipeline (3.3.1-27) wheezy · efbcdbb7
  Olivier Langella authored 11 years ago
  
  efbcdbb7
- O.O1 replaced by 0.01 · 978dac78
  Olivier Langella authored 11 years ago
  
  978dac78
Nov 01, 2013
- objects to writer XPIP files · ba4df1b2
  Olivier Langella authored 11 years ago
  
  ba4df1b2
- XPIP file writer moved in output package with a writer · 4de67483
  Olivier Langella authored 11 years ago
  
  4de67483
Oct 31, 2013
- xtandempipeline (3.3.1-26) wheezy · 4810cdc0
  Olivier Langella authored 11 years ago
  
  4810cdc0
- new column added in ods output to know the theoretical number of tryptic peptides per prot · 514a4809
  Olivier Langella authored 11 years ago
  
  514a4809
- emPAI computing error fixed : all components are treated as double · 484dd156
  Olivier Langella authored 11 years ago
  
  484dd156
Oct 30, 2013
- Match object cleaning : function renamed, obsolete functions removed · 6eefa061
  Olivier Langella authored 11 years ago
  
  6eefa061
- getNumberOfSpecificPeptideInSubGroup renamed in getNumberOfSpecificSpectraInSubGroup · a8ab55fc
  Olivier Langella authored 11 years ago
  
  new column in ods output for protein : number of specific spectra
  a8ab55fc
Oct 28, 2013
- xtandempipeline launch menu placed in Science, rather than Education · ed771583
  Olivier Langella authored 11 years ago
  
  ed771583
- xtandempipeline (3.3.1-24) wheezy · 2536f863
  Olivier Langella authored 11 years ago
  
  2536f863
Oct 25, 2013
- emPAI added (Ishihama, Mann 2006) as requested by F. Rusconi · ac7ac994
  Olivier Langella authored 11 years ago
  
  ac7ac994
Oct 24, 2013
- check that command file exists and is executable · afb0c500
  Olivier Langella authored 11 years ago
  
  afb0c500
- PAI attribute added in matche element (F. Rusconi's request) · beb9f82a
  Olivier Langella authored 11 years ago
  
  beb9f82a
- PAI computing method checked · 6577611d
  Olivier Langella authored 11 years ago
  
  All PAI computed in xtp are using the same method : number of spectrums from valid peptides divided by the theoretical number of tryptic peptides
  6577611d
Oct 04, 2013
- xtandempipeline (3.3.1-23) wheezy · 1f8f27c0
  Olivier Langella authored 11 years ago
  
  1f8f27c0
Sep 30, 2013
- getBaseName function moved to PklFile · 4a7e69e9
  Olivier Langella authored 11 years ago
  
  4a7e69e9
- xtandempipeline (3.3.1-22) wheezy · e6cb6f80
  Olivier Langella authored 11 years ago
  
  e6cb6f80
- force threads to 1 in condor analysis · af940c0e
  Olivier Langella authored 11 years ago
  
  af940c0e
Sep 27, 2013
- uneeded imports removed · 08d4ef9a
  Olivier Langella authored 11 years ago
  
  08d4ef9a
- check that FastaFiles are readable · c69cd126
  Olivier Langella authored 11 years ago
  
  c69cd126
- huge refactoring to manage X!Tandem temporary files · 276a72ae
  Olivier Langella authored 11 years ago
  
  276a72ae
- masschroq ml writer uses now PeptideMassSet and PAPPSO numbering style · 2081f07e
  Olivier Langella authored 11 years ago
  
  2081f07e
Sep 25, 2013
- better with the new class · f4015f05
  Olivier Langella authored 11 years ago
  
  f4015f05