Commits · 12344299ac5db0c9a3012d45cfcaa4dfd7b2b828 · PAPPSO / i2MassChroQ

Feb 13, 2013

langella authored 12 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@342 b8ef2a07-7df7-436f-90b9-41648038564b

12344299

serializable interface added · c6c248a9

langella authored 12 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@341 b8ef2a07-7df7-436f-90b9-41648038564b

c6c248a9

give line number on sax parse error · ef980daa

langella authored 12 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@340 b8ef2a07-7df7-436f-90b9-41648038564b

ef980daa

Feb 12, 2013
- PeptideStoreClassic produces "natural" peptides, without MapDb · dd1b4098
  langella authored 12 years ago
  
  git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@339 b8ef2a07-7df7-436f-90b9-41648038564b
  dd1b4098
Feb 11, 2013

AlgoGrouping created · 006b3d7c

langella authored 12 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@338 b8ef2a07-7df7-436f-90b9-41648038564b

006b3d7c

Feb 10, 2013

· 9847b717

langella authored 12 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@337 b8ef2a07-7df7-436f-90b9-41648038564b

9847b717

force instanciation of MsRun throught MsRunSet · 2a60631f

langella authored 12 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@336 b8ef2a07-7df7-436f-90b9-41648038564b

2a60631f

msRun is created with only sample name (no extension) · 1c443540

langella authored 12 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@335 b8ef2a07-7df7-436f-90b9-41648038564b

1c443540

IdentificationDataFile does not provide getFile anymore · ce3c4633

langella authored 12 years ago

trying to handle windows filename under linux

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@334 b8ef2a07-7df7-436f-90b9-41648038564b

ce3c4633

Feb 08, 2013

grouping algorithm completely separated from xtp code · 98171e24

langella authored 12 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@333 b8ef2a07-7df7-436f-90b9-41648038564b

98171e24

speed up peptideId sort by storing hashSampleScan in PeptideId · 0d9b10bc
langella authored 12 years ago
```
git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@332 b8ef2a07-7df7-436f-90b9-41648038564b
```
0d9b10bc

mapdb almost works · c6f0752e

langella authored 12 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@331 b8ef2a07-7df7-436f-90b9-41648038564b

c6f0752e

serializable · 14b84b35

langella authored 12 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@330 b8ef2a07-7df7-436f-90b9-41648038564b

14b84b35

Feb 07, 2013

new PeptideStore using MapDb · 8cec9253

langella authored 12 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@329 b8ef2a07-7df7-436f-90b9-41648038564b

8cec9253

mapDb test · f2832164

langella authored 12 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@328 b8ef2a07-7df7-436f-90b9-41648038564b

f2832164

Feb 04, 2013

end tag at the right place · 0d19ae94

langella authored 12 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@327 b8ef2a07-7df7-436f-90b9-41648038564b

0d19ae94

Jan 30, 2013

old domxml proticdbml removed · 7f9053df

langella authored 12 years ago

proticdbml now contains xtandempipeline filter parameters

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@326 b8ef2a07-7df7-436f-90b9-41648038564b

7f9053df

Jan 16, 2013

refactoring code in order to use MapDB · 77234294

langella authored 12 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@325 b8ef2a07-7df7-436f-90b9-41648038564b

77234294

Oct 10, 2012

classpath modified · 8010aa88

langella authored 12 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@324 b8ef2a07-7df7-436f-90b9-41648038564b

8010aa88

obsolete jar deleted · 4bb4acc3

langella authored 12 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@323 b8ef2a07-7df7-436f-90b9-41648038564b

4bb4acc3

Update documentation · 94563be7

valot authored 12 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@322 b8ef2a07-7df7-436f-90b9-41648038564b

94563be7

ant file generated by cmake · d901c4c6

langella authored 12 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@321 b8ef2a07-7df7-436f-90b9-41648038564b

d901c4c6

jnlp with mascotdatfile 3.3 · c2a944f7

langella authored 12 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@320 b8ef2a07-7df7-436f-90b9-41648038564b

c2a944f7

compile args · 5f19547e

langella authored 12 years ago

confdir

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@319 b8ef2a07-7df7-436f-90b9-41648038564b

5f19547e

Sep 18, 2012

fixed xml namespace declaration · 6683b5c0

langella authored 12 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@318 b8ef2a07-7df7-436f-90b9-41648038564b

6683b5c0

Aug 23, 2012

new mascotdatfile library · e098948f

langella authored 12 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@317 b8ef2a07-7df7-436f-90b9-41648038564b

e098948f

delete uneeded file · dec4e7a0

langella authored 12 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@316 b8ef2a07-7df7-436f-90b9-41648038564b

dec4e7a0

CMakeList modified to improve debian package build · 2ec6dbdb

langella authored 12 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@315 b8ef2a07-7df7-436f-90b9-41648038564b

2ec6dbdb

Aug 21, 2012

replace devoy by decoy · ab9bf0d2

langella authored 12 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@314 b8ef2a07-7df7-436f-90b9-41648038564b

ab9bf0d2

Jul 10, 2012

new PROTICdbMLWriter · 0227eaf3

langella authored 12 years ago

deleting old MassChroQml Writer

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@313 b8ef2a07-7df7-436f-90b9-41648038564b

0227eaf3

Jun 22, 2012

Corrected link to xtandem executable and java download · 2bc432a4

valot authored 12 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@312 b8ef2a07-7df7-436f-90b9-41648038564b

2bc432a4

Jun 08, 2012

Update changelog on documentation · e753ffd0

valot authored 12 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@311 b8ef2a07-7df7-436f-90b9-41648038564b

e753ffd0

Jun 07, 2012

xtandempipeline (3.3.0-1) lucid; · ee55b241

langella authored 12 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@308 b8ef2a07-7df7-436f-90b9-41648038564b

ee55b241

Jun 06, 2012

ignore cmake generated files · 4ce4f61b

langella authored 12 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@307 b8ef2a07-7df7-436f-90b9-41648038564b

4ce4f61b

delete uneeded files (generated by cmake) · 07539527

langella authored 12 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@306 b8ef2a07-7df7-436f-90b9-41648038564b

07539527

Modified version name et jnlp loading · 9a73a1d7

valot authored 12 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@305 b8ef2a07-7df7-436f-90b9-41648038564b

9a73a1d7

Jun 05, 2012

shortcut for equal functions · 097aa5fe

langella authored 12 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@304 b8ef2a07-7df7-436f-90b9-41648038564b

097aa5fe

Jun 04, 2012

fixed bug detected by Benoit Valot and Mélisande Blein : X axis label were not... · 0006c972

langella authored 12 years ago

fixed bug detected by Benoit Valot and Mélisande Blein : X axis label were not visible using inkscape

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@303 b8ef2a07-7df7-436f-90b9-41648038564b

0006c972

May 30, 2012

removed commented code using hascode · ccd5a832

valot authored 12 years ago

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@302 b8ef2a07-7df7-436f-90b9-41648038564b

ccd5a832

Add equals function to group and subgroup · 306af45c

valot authored 12 years ago

Don't clear and addAll at each subgroup addition of groupList
Performed removed non informative sub-group after finish grouping.
Now, all work fine and are reproductibly.

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@301 b8ef2a07-7df7-436f-90b9-41648038564b

306af45c

Admin message

Admin message