start and stop removed from output : non redundancy output is not compatible...

start and stop removed from output : non redundancy output is not compatible with complete peptide list of each protein

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@355 b8ef2a07-7df7-436f-90b9-41648038564b

xtandempipeline/src/fr/inra/pappso/xtandempipeline/filter_print/print_ods_peptide_list.java

@@ -29,8 +29,6 @@ public class print_ods_peptide_list extends printOdsBase {
 		headStrList.add("Rt");
 		headStrList.add("Sequence");
 		headStrList.add("Modifs");
-		headStrList.add("Start");
-		headStrList.add("Stop");
 		headStrList.add("Used");
 		headStrList.add("on a total of");
 		headStrList.add("Sub-groups");
@@ -79,8 +77,6 @@ public class print_ods_peptide_list extends printOdsBase {
 			// S.append("\t" + pep.get_sequence());
 			odsTable.writeCell(pep.get_Modifs_formater());
 			// S.append("\t" + pep.get_Modifs_formater());
-			odsTable.writeCell(pep.get_start());
-			odsTable.writeCell(pep.get_stop());
 
 			if (set.size() > 1) {
 				odsTable.writeCell(set.size());

xtandempipeline/src/fr/inra/pappso/xtandempipeline/filter_print/print_peptide_list.java

@@ -20,10 +20,9 @@ public class print_peptide_list extends print_base {
 	public void print_header() throws Exception {
 		String S = "Groupe" + "\t" + "Description" + "\t" + "Sample" + "\t"
 				+ "Scan" + "\t" + "Rt" + "\t" + "Sequence" + "\t" + "Modifs"
-				+ "\t" + "Start" + "\t" + "Stop" + "\t" + "Used" + "\t"
-				+ "on a total of" + "\t" + "Sub-groups" + "\t" + "E-value"
-				+ "\t" + "Charge" + "\t" + "MH+ Obs" + "\t" + "MH+ theo" + "\t"
-				+ "DeltaMH+" + "\t" + "Delta-ppm" + "\n";
+				+ "\t" + "Used" + "\t" + "on a total of" + "\t" + "Sub-groups"
+				+ "\t" + "E-value" + "\t" + "Charge" + "\t" + "MH+ Obs" + "\t"
+				+ "MH+ theo" + "\t" + "DeltaMH+" + "\t" + "Delta-ppm" + "\n";
 		out.write(S);
 	}
 
@@ -46,8 +45,6 @@ public class print_peptide_list extends print_base {
 			S.append("\t" + pep.get_RT());
 			S.append("\t" + pep.getSequence());
 			S.append("\t" + pep.get_Modifs_formater());
-			S.append("\t" + pep.get_start());
-			S.append("\t" + pep.get_stop());
 
 			if (set.size() > 1)
 				S.append("\t" + set.size() + "\t"