From 3f0351f0807bf3ef1f906c736469679db449dcda Mon Sep 17 00:00:00 2001
From: langella <langella@b8ef2a07-7df7-436f-90b9-41648038564b>
Date: Fri, 19 Apr 2013 13:08:03 +0000
Subject: [PATCH] start and stop removed from output : non redundancy output is
not compatible with complete peptide list of each protein
git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@355 b8ef2a07-7df7-436f-90b9-41648038564b
---
.../filter_print/print_ods_peptide_list.java | 4 ----
.../xtandempipeline/filter_print/print_peptide_list.java | 9 +++------
2 files changed, 3 insertions(+), 10 deletions(-)
diff --git a/xtandempipeline/src/fr/inra/pappso/xtandempipeline/filter_print/print_ods_peptide_list.java b/xtandempipeline/src/fr/inra/pappso/xtandempipeline/filter_print/print_ods_peptide_list.java
index 660e3975c..68b0500bb 100644
--- a/xtandempipeline/src/fr/inra/pappso/xtandempipeline/filter_print/print_ods_peptide_list.java
+++ b/xtandempipeline/src/fr/inra/pappso/xtandempipeline/filter_print/print_ods_peptide_list.java
@@ -29,8 +29,6 @@ public class print_ods_peptide_list extends printOdsBase {
headStrList.add("Rt");
headStrList.add("Sequence");
headStrList.add("Modifs");
- headStrList.add("Start");
- headStrList.add("Stop");
headStrList.add("Used");
headStrList.add("on a total of");
headStrList.add("Sub-groups");
@@ -79,8 +77,6 @@ public class print_ods_peptide_list extends printOdsBase {
// S.append("\t" + pep.get_sequence());
odsTable.writeCell(pep.get_Modifs_formater());
// S.append("\t" + pep.get_Modifs_formater());
- odsTable.writeCell(pep.get_start());
- odsTable.writeCell(pep.get_stop());
if (set.size() > 1) {
odsTable.writeCell(set.size());
diff --git a/xtandempipeline/src/fr/inra/pappso/xtandempipeline/filter_print/print_peptide_list.java b/xtandempipeline/src/fr/inra/pappso/xtandempipeline/filter_print/print_peptide_list.java
index e5fbd530c..a68752732 100644
--- a/xtandempipeline/src/fr/inra/pappso/xtandempipeline/filter_print/print_peptide_list.java
+++ b/xtandempipeline/src/fr/inra/pappso/xtandempipeline/filter_print/print_peptide_list.java
@@ -20,10 +20,9 @@ public class print_peptide_list extends print_base {
public void print_header() throws Exception {
String S = "Groupe" + "\t" + "Description" + "\t" + "Sample" + "\t"
+ "Scan" + "\t" + "Rt" + "\t" + "Sequence" + "\t" + "Modifs"
- + "\t" + "Start" + "\t" + "Stop" + "\t" + "Used" + "\t"
- + "on a total of" + "\t" + "Sub-groups" + "\t" + "E-value"
- + "\t" + "Charge" + "\t" + "MH+ Obs" + "\t" + "MH+ theo" + "\t"
- + "DeltaMH+" + "\t" + "Delta-ppm" + "\n";
+ + "\t" + "Used" + "\t" + "on a total of" + "\t" + "Sub-groups"
+ + "\t" + "E-value" + "\t" + "Charge" + "\t" + "MH+ Obs" + "\t"
+ + "MH+ theo" + "\t" + "DeltaMH+" + "\t" + "Delta-ppm" + "\n";
out.write(S);
}
@@ -46,8 +45,6 @@ public class print_peptide_list extends print_base {
S.append("\t" + pep.get_RT());
S.append("\t" + pep.getSequence());
S.append("\t" + pep.get_Modifs_formater());
- S.append("\t" + pep.get_start());
- S.append("\t" + pep.get_stop());
if (set.size() > 1)
S.append("\t" + set.size() + "\t"
--
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