Commit 12ed4bb2 authored 12 years ago by langella

mapdb removed

PeptideId removed : back to simple Peptide object

git-svn-id: https://subversion.renater.fr/xtandempipeline/trunk@354 b8ef2a07-7df7-436f-90b9-41648038564b

parent a470cfb7

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xtandempipeline/.classpath 0 additions, 1 deletion

xtandempipeline/.classpath
xtandempipeline/build_ubuntu.xml.cmake 7 additions, 4 deletions

xtandempipeline/build_ubuntu.xml.cmake
xtandempipeline/lib/mapdb-0.9-20130207.004629-46.jar 0 additions, 0 deletions

xtandempipeline/lib/mapdb-0.9-20130207.004629-46.jar
xtandempipeline/src/fr/inra/pappso/xtandempipeline/XtandemPipelineMain.java 7 additions, 5 deletions

...c/fr/inra/pappso/xtandempipeline/XtandemPipelineMain.java
xtandempipeline/src/fr/inra/pappso/xtandempipeline/XtandemPipelineSession.java 0 additions, 17 deletions

...r/inra/pappso/xtandempipeline/XtandemPipelineSession.java
xtandempipeline/src/fr/inra/pappso/xtandempipeline/class_msms/Identification.java 5 additions, 5 deletions

...nra/pappso/xtandempipeline/class_msms/Identification.java
xtandempipeline/src/fr/inra/pappso/xtandempipeline/class_msms/MapDb/PeptideId.java 0 additions, 12 deletions

...ra/pappso/xtandempipeline/class_msms/MapDb/PeptideId.java
xtandempipeline/src/fr/inra/pappso/xtandempipeline/class_msms/MapDb/PeptideIdClassic.java 0 additions, 24 deletions

...so/xtandempipeline/class_msms/MapDb/PeptideIdClassic.java
xtandempipeline/src/fr/inra/pappso/xtandempipeline/class_msms/MapDb/PeptideIdMapDb.java 0 additions, 80 deletions

...ppso/xtandempipeline/class_msms/MapDb/PeptideIdMapDb.java
xtandempipeline/src/fr/inra/pappso/xtandempipeline/class_msms/MapDb/PeptideMapDb.java 0 additions, 141 deletions

...pappso/xtandempipeline/class_msms/MapDb/PeptideMapDb.java
xtandempipeline/src/fr/inra/pappso/xtandempipeline/class_msms/MapDb/PeptideStore.java 9 additions, 5 deletions

...pappso/xtandempipeline/class_msms/MapDb/PeptideStore.java
xtandempipeline/src/fr/inra/pappso/xtandempipeline/class_msms/MapDb/PeptideStoreClassic.java 0 additions, 18 deletions

...xtandempipeline/class_msms/MapDb/PeptideStoreClassic.java
xtandempipeline/src/fr/inra/pappso/xtandempipeline/class_msms/MapDb/PeptideStoreMapDb.java 0 additions, 48 deletions

...o/xtandempipeline/class_msms/MapDb/PeptideStoreMapDb.java
xtandempipeline/src/fr/inra/pappso/xtandempipeline/class_msms/Match.java 50 additions, 61 deletions

.../src/fr/inra/pappso/xtandempipeline/class_msms/Match.java
xtandempipeline/src/fr/inra/pappso/xtandempipeline/class_msms/PhosphoIsland.java 1 addition, 3 deletions

...inra/pappso/xtandempipeline/class_msms/PhosphoIsland.java
xtandempipeline/src/fr/inra/pappso/xtandempipeline/class_msms/PhosphoIslandSet.java 8 additions, 6 deletions

...a/pappso/xtandempipeline/class_msms/PhosphoIslandSet.java
xtandempipeline/src/fr/inra/pappso/xtandempipeline/filter_print/calculation_base_peptide.java 15 additions, 16 deletions

...tandempipeline/filter_print/calculation_base_peptide.java
xtandempipeline/src/fr/inra/pappso/xtandempipeline/filter_print/calculation_peptide_fdr.java 8 additions, 8 deletions

...xtandempipeline/filter_print/calculation_peptide_fdr.java
xtandempipeline/src/fr/inra/pappso/xtandempipeline/filter_print/calculation_peptide_fdr_distribution.java 23 additions, 25 deletions

...ne/filter_print/calculation_peptide_fdr_distribution.java
xtandempipeline/src/fr/inra/pappso/xtandempipeline/filter_print/calculation_peptide_mh_deviation.java 3 additions, 5 deletions

...peline/filter_print/calculation_peptide_mh_deviation.java

with 136 additions and 484 deletions

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mapdb removed