fixed dictionary compilation process

rewrite-taxonomy.snakefile

@@ -6,10 +6,10 @@ rule all:
         config['OUTDIR'] + '/finish.txt',
         config['OUTDIR'] + '/taxid_microorganisms.txt',
         config['OUTDIR'] + '/taxa+id_microorganisms.txt',
-        # config['OUTDIR'] + '/taxa+id_microorganisms.trie',
+        config['OUTDIR'] + '/taxa+id_microorganisms.trie',
         config['OUTDIR'] + '/taxid_full.txt',
         config['OUTDIR'] + '/taxa+id_full.txt',
-        # config['OUTDIR'] + '/taxa+id_full.trie'
+        config['OUTDIR'] + '/taxa+id_full.trie'
 
 
 rule check:
@@ -21,7 +21,7 @@ rule check:
 
 
     shell:
-        '''{config[ALVISNLP]} -J-Xmx12G -alias taxo {input} -alias trie {output} compile-taxonomy.plan'''
+        '''{config[ALVISNLP]} -J-Xmx24G -alias taxo {input} -alias trie {output} compile-taxonomy.plan'''
 
 
 rule microorganisms: