diff --git a/rewrite-taxonomy.snakefile b/rewrite-taxonomy.snakefile index d2daf4c42de938327692993e055e7571cc8ff5ef..003577ea882a3e0618027c6e1c737aada982b27e 100644 --- a/rewrite-taxonomy.snakefile +++ b/rewrite-taxonomy.snakefile @@ -6,10 +6,10 @@ rule all: config['OUTDIR'] + '/finish.txt', config['OUTDIR'] + '/taxid_microorganisms.txt', config['OUTDIR'] + '/taxa+id_microorganisms.txt', - # config['OUTDIR'] + '/taxa+id_microorganisms.trie', + config['OUTDIR'] + '/taxa+id_microorganisms.trie', config['OUTDIR'] + '/taxid_full.txt', config['OUTDIR'] + '/taxa+id_full.txt', - # config['OUTDIR'] + '/taxa+id_full.trie' + config['OUTDIR'] + '/taxa+id_full.trie' rule check: @@ -21,7 +21,7 @@ rule check: shell: - '''{config[ALVISNLP]} -J-Xmx12G -alias taxo {input} -alias trie {output} compile-taxonomy.plan''' + '''{config[ALVISNLP]} -J-Xmx24G -alias taxo {input} -alias trie {output} compile-taxonomy.plan''' rule microorganisms: