From ea5c4917dc53276f504019f4ea77ea06b3cc47f7 Mon Sep 17 00:00:00 2001
From: Robert Bossy <Robert.Bossy@inra.fr>
Date: Fri, 22 Oct 2021 12:15:10 +0200
Subject: [PATCH] fixed dictionary compilation process
---
rewrite-taxonomy.snakefile | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/rewrite-taxonomy.snakefile b/rewrite-taxonomy.snakefile
index d2daf4c..003577e 100644
--- a/rewrite-taxonomy.snakefile
+++ b/rewrite-taxonomy.snakefile
@@ -6,10 +6,10 @@ rule all:
config['OUTDIR'] + '/finish.txt',
config['OUTDIR'] + '/taxid_microorganisms.txt',
config['OUTDIR'] + '/taxa+id_microorganisms.txt',
- # config['OUTDIR'] + '/taxa+id_microorganisms.trie',
+ config['OUTDIR'] + '/taxa+id_microorganisms.trie',
config['OUTDIR'] + '/taxid_full.txt',
config['OUTDIR'] + '/taxa+id_full.txt',
- # config['OUTDIR'] + '/taxa+id_full.trie'
+ config['OUTDIR'] + '/taxa+id_full.trie'
rule check:
@@ -21,7 +21,7 @@ rule check:
shell:
- '''{config[ALVISNLP]} -J-Xmx12G -alias taxo {input} -alias trie {output} compile-taxonomy.plan'''
+ '''{config[ALVISNLP]} -J-Xmx24G -alias taxo {input} -alias trie {output} compile-taxonomy.plan'''
rule microorganisms:
--
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