Merge branch Issues#143 with master
It's due to bug with the older version :
- just R1 and R2 files are used for analyses (ContaminationSearch, FastQC etc ... )
- R1, R2 and I1 after illuminaFilter if it's done are saved
- not impacted illlumina_qc analysis
Change :
- ng6_workflow
- add new function in utils for catch R1,R2 and I1 files after illuminafilter
- add new files to manage in smarty viszualisation
(Replaces the merge !68 (closed))