#242 implement phpseclib for ssh connexion

See merge request !145

typo3 V11

See merge request !142

update to typo3 V11

See merge request !141

Merge branch issue#228.2 with master

See merge request !140

Revert "Merge branch 'issue#228' into 'master'"

See merge request !139

- unhiding a run/analysis now only impacts the elements downward, an not
upward anymore.

Issue #228

This reverts merge request !138

Merge branch issue#228 with master

See merge request !138

- Unhiding a run will no longer unhide the analyses below.
- Unhiding a project will no longer unhide the runs and analyses below.
- Unhiding an analysis will no longer unhide the run and project above.

Issue #228

Add HTML repport for ONT run

See merge request !137

	Ref : #227

Update to the purge process to ignore hidden elements

See merge request !136

Removing the size display from the project and run pages

See merge request !135

- The hidden runs and analyzes are now excluded from the purge demands
and the mail. They will from now on be purged semi-manually.

Issue #225

- This size computing and displaying has been removed from those pages.

Issue #224

Modification of BWA algo #221

See merge request !134

Merge branch issue#218 with master

See merge request !133

In the "download" analysis tab, the .png files are not excluded from the
list anymore.

Issue #218

Merge branch issue#217 with master

See merge request !131

Merge branch issue#216 with master

See merge request !132

on line 173, the purge_delay param had 2 $.
Issue #217

The path to applicaion.properties has been fixed.

issue #216

The path to application.properties has been fixed

Issue #216

update require and use for tx_nG6_db and utils

See merge request !130

Typo3v10

See merge request !129