This reverts merge request !138

Merge branch issue#228 with master

See merge request !138

- Unhiding a run will no longer unhide the analyses below.
- Unhiding a project will no longer unhide the runs and analyses below.
- Unhiding an analysis will no longer unhide the run and project above.

Issue #228

Add HTML repport for ONT run

See merge request !137

	Ref : #227

Update to the purge process to ignore hidden elements

See merge request !136

Removing the size display from the project and run pages

See merge request !135

- The hidden runs and analyzes are now excluded from the purge demands
and the mail. They will from now on be purged semi-manually.

Issue #225

- This size computing and displaying has been removed from those pages.

Issue #224

Modification of BWA algo #221

See merge request !134

Merge branch issue#218 with master

See merge request !133

In the "download" analysis tab, the .png files are not excluded from the
list anymore.

Issue #218

Merge branch issue#217 with master

See merge request !131

Merge branch issue#216 with master

See merge request !132

on line 173, the purge_delay param had 2 $.
Issue #217

The path to applicaion.properties has been fixed.

issue #216

The path to application.properties has been fixed

Issue #216

update require and use for tx_nG6_db and utils

See merge request !130

Typo3v10

See merge request !129

Merge branch issue#210 and master

See merge request !128

The ssh user test has been fixed (there was a permission error).

Issue #210

Merge branch Issue#205 with master

See merge request !126

The path to the PasswordHashFactory class has been updated with the new
typo3 version. This commit fixes the hash_password() function.

Issue#205

Update quickstart.html

See merge request !125

Update index.html

See merge request !124

Typo3 v9

See merge request !123