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A Python scripting interface for CB-Geo MPM
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Dépôt publique de documentation de référence sur logiciels, méthodes ou pratiques pour les chercheurs, collaborateurs et étudiants de l'UMR ASTRE. Contact : facundo.munoz@cirad.fr
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Seine River Basin modelling
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PAPPSOms++ is a comprehensive C++ library including useful functions to handle mass spectrometric data, either in a proteomics setting or for data visualization. Abstractions include peptides, proteins, isotopic clusters, mass/drift spectra...
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MassChroQ (Mass Chromatogram Quantification) is a powerful and versatile software that performs retention time alignment, XIC extraction, peak detection and quantification on data obtained from liquid chromatography-mass spectrometry techniques.
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The aim of this project is to provide an R package for big integer (and big rational) computations. This is achieved via an C++ interface to the GNU MP ("GMP") library, and S3 classes "bigz", "bigq", etc.
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Meteor (Metagenomic Explorator), a software for profiling metagenomic data at gene level
Topics: metagenomics... -
Package R with a shiny interface to run an interactive differential gene/region expression analysis.
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VGEST wrapper R package
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A presentation and day book area.
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Cours accessible à https://genotoul-bioinfo.pages.mia.inra.fr/use-nextflow-nfcore-course/
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pubilc repository for the Ambhas groundwater model developped during the ATCHA project
model documentation: https://record-open-archives.pages.mia.inra.fr/ambhas_cpp/
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pathway variability analysis using the miom library
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diversity-based enumeration of optimal context-specific metabolic networks using the cobrapy library
github mirror: https://github.com/MetExplore/dexom-python