A Python scripting interface for CB-Geo MPM

Dépôt publique de documentation de référence sur logiciels, méthodes ou pratiques pour les chercheurs, collaborateurs et étudiants de l'UMR ASTRE. Contact : facundo.munoz@cirad.fr

Seine River Basin modelling

PAPPSOms++ is a comprehensive C++ library including useful functions to handle mass spectrometric data, either in a proteomics setting or for data visualization. Abstractions include peptides, proteins, isotopic clusters, mass/drift spectra...

MassChroQ (Mass Chromatogram Quantification) is a powerful and versatile software that performs retention time alignment, XIC extraction, peak detection and quantification on data obtained from liquid chromatography-mass spectrometry techniques.

The aim of this project is to provide an R package for big integer (and big rational) computations. This is achieved via an C++ interface to the GNU MP ("GMP") library, and S3 classes "bigz", "bigq", etc.

Meteor (Metagenomic Explorator), a software for profiling metagenomic data at gene level

Package R with a shiny interface to run an interactive differential gene/region expression analysis.

VGEST wrapper R package

A presentation and day book area.

Cours accessible à https://genotoul-bioinfo.pages.mia.inra.fr/use-nextflow-nfcore-course/

pubilc repository for the Ambhas groundwater model developped during the ATCHA project

model documentation: https://record-open-archives.pages.mia.inra.fr/ambhas_cpp/

pathway variability analysis using the miom library

diversity-based enumeration of optimal context-specific metabolic networks using the cobrapy library

github mirror: https://github.com/MetExplore/dexom-python