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Dotplot large Genomes in an Interactive, Efficient and Simple way

Species Perscrutandis Enixe Locis Locabuntur.

Generate a population of individuals with SV, with paried end reads for each

We introduce jflow, a Workflow Management System (WMS), composed of Jquery plugins which can easily be embedded in any WEB application and a Python library providing all requested features to setup, run and monitor workflows.

A viewer using D-Genies

Tropolink backend (API)

jvenn is a plug-in for the jQuery Javascript library. It is a flexible tool, based upon the venny tool first developed by J.C Oliveros (Oliveros, J.C (2007) VENNY, An integrative tool for comparing lists with Venn Diagrams).

The pyrocleaner is intended to clean the reads included in the sff file in order to ease the assembly process.

This project is dedicated to targets prediction of bacterial non-coding RNA and their visualisation through a web interface.

NGSPipelines integrates pipelines and user interfaces to help biologists to analyse data outputed from biological applications such as RNA-seq, sRNA-seq, Chip-Seq, BS-seq, and so on.

The software enable to retrieve information (exon boundaries, mutation effect, known SNP...) about transcribed SNP. It's based on ensembl API.

nG6

Algorithms for dense linear systems and used for Finites Elements Method. Simulators codes.

mixKernel is a multiple kernel framework that allows to integrate multiple datasets of various types into a single analysis. The package is published on CRAN: https://cran.r-project.org/package=mixKernel

List of workflows (nextflow/snakemake) tested for Genotoul Cluster.

Materials for ENAC course on graphs and networks. It contains slides and practical exercices for the course. A list of past exams is also available.

Documents des cours

Méthodes de preuves, optimisation et satisfaction de contraintes (MPOSC) M2R IA, UPS Toulouse. Modélisation probabiliste et Algorithmes pour la Biologie (MAB) M2R IA, UPS Toulouse. Graphes et réseaux, SupAero Toulouse.