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X!TandemPipeline is a free software (GPL v3) that helps you to filter and group your peptide/protein identifications from MS/MS mass spectra.
Publication: J. Proteome Res. 2017, 16, 2, 494–503 -- https://doi.org/10.102
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About Weighted Constraint Satisfaction Problem (WCSP). Réseaux de contraintes pondérées, Réseaux de fonctions de coût. toulbar2 : solver for cost function networks.
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Some R codes and a package (in beta) for changepoint detection in trees (with model selection and dynamic programming). It is based on the Ph.D. work of Solène Thépaut (Chapter 3, see: https://tel.archives-ouvertes.fr/tel-02457109/document)
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This a the private clone archive of toulbar2. The real project is on GitHub. This one contains the "diverse solution" branch that needs to be pulled in the main repo (master)
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toolbar is an exact discrete optimization tool for graphical models. For most use cases, it has been obsoleted by toulbar2 (on GitHub).
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A suite of C++ programs developed for transposable element search and their annotation in large eukaryotic genome sequence. A part of the REPET package.
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