All scripts concerning GBS analysis
report from a BAM alignment the number of BX:Z: tags shared between to blocks of given size
A set of population genomic scripts and utilities.
Oxford Nanopore and Bionano Genomics technologies evaluation for plant structural variations detection.
Some scripts for the methylation analysis of the ChickStress project.
Tutorial example for creation of a snakemake workflow using a singularity container on a hpc
A new user-friendly metabarcoding pipeline for the characterization of microbial diversity from 16S, 18S, 23S rRNA genes amplicons DOI: 10.5281/zenodo.3678129
Modified of the code CleaveLand to have the results for all isoforms.
CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets. Addo-Quaye C &. Bioinformatics.
Adaptation of miRDeep126.96.36.199 for dicotyledons, with replaced scripts in which parameters were optimized for dicot plants.
This parameters come from Characterization of statistical features for plant microRNA prediction-Thakur V &al -BMC Genomics
Family-Companion: analyse, visualise, browse, query and share your homology clusters Ludovic Cottret, Corinne Rancurel, Martial Briand, Sebastien Carrere BioArxiv, doi: https://doi.org/10.1101/266742