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Jerome Duriez / yademoca
GNU General Public License v2.0 or laterPour projets SeaTech sur la Fast Marching Method
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PAPPSO / xtpcpp
GNU General Public License v3.0 onlyX!TandemPipeline is a free software (GPL v3) that helps you to filter and group your peptide/protein identifications from MS/MS mass spectra.
Publication: J. Proteome Res. 2017, 16, 2, 494–503 -- https://doi.org/10.102
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About Weighted Constraint Satisfaction Problem (WCSP). Réseaux de contraintes pondérées, Réseaux de fonctions de coût. toulbar2 : solver for cost function networks.
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Some R codes and a package (in beta) for changepoint detection in trees (with model selection and dynamic programming). It is based on the Ph.D. work of Solène Thépaut (Chapter 3, see: https://tel.archives-ouvertes.fr/tel-02457109/document)
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Thomas Schiex / toulbar2-save
MIT LicenseThis a the private clone archive of toulbar2. The real project is on GitHub. This one contains the "diverse solution" branch that needs to be pulled in the main repo (master)
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toolbar is an exact discrete optimization tool for graphical models. For most use cases, it has been obsoleted by toulbar2 (on GitHub).
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URGI-Anagen / TE_finder
CeCILL Free Software License Agreement v2.0A suite of C++ programs developed for transposable element search and their annotation in large eukaryotic genome sequence. A part of the REPET package.
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record / sunflo
BSD 3-Clause "New" or "Revised" LicenseUpdated -
QTL / spell-qtl
GNU General Public License v3.0 onlySpecies Perscrutandis Enixe Locis Locabuntur.
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Nathalie Rousse / spell-qtl
GNU General Public License v3.0 onlySpecies Perscrutandis Enixe Locis Locabuntur.
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PAPPSO / specoms
GNU General Public License v3.0 onlyC++ implementation of SpecOMS and new developments
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GQE-ACEP / SeSAM
GNU General Public License v3.0 or laterThe SeSAM R package allows fully automatic construction of two successive genetic maps: a first one including an optimized subset of markers ensuring the robustness of orders to a given statistical threshold, and a second one including almost all polymorphic markers. It can handle all common types of biparental mapping populations, including progenies obtained from crossing heterozygous parents. In addition to the automatic procedure, SeSAM includes many functions for interactive mapping, file formats conversions, and generates many graphs useful to assess the quality of data and maps.
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R'MES is a tool for studying word frequencies in biological sequences.
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SiriusQuality / sqcode / Release
MIT LicenseUpdated -
RECORD platform Web Development - espace de développements Web de la plate-forme RECORD effectués autour de modèles RECORD (prototype d'outil, réutilisabilité de code).
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archive du projet recmoustics
Un modèle d'irrigation couplé au modèle bio-physique STICS
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