Explore projects

A clone of the PMRF code (MIT licence) to be able to add some minor bells and whistles for symmetry handling

toolbar is an exact discrete optimization tool for graphical models. For most use cases, it has been obsoleted by toulbar2 (on GitHub).

This a the private clone archive of toulbar2. The real project is on GitHub. This one contains the "diverse solution" branch that needs to be pulled in the main repo (master)

Species Perscrutandis Enixe Locis Locabuntur.

Some R codes and a package (in beta) for changepoint detection in trees (with model selection and dynamic programming). It is based on the Ph.D. work of Solène Thépaut (Chapter 3, see: https://tel.archives-ouvertes.fr/tel-02457109/document)

Documents des cours

Méthodes de preuves, optimisation et satisfaction de contraintes (MPOSC) M2R IA, UPS Toulouse. Modélisation probabiliste et Algorithmes pour la Biologie (MAB) M2R IA, UPS Toulouse. Graphes et réseaux, SupAero Toulouse.

Another multidimensional analysis packag : Hierarchical clustering and principal component analysis with both general and robusts methods

Multiple is a program for de novo discovery of DNA motifs corresponding to Transcription Factor binding sites based on a probabilistic model of the DNA sequence that incorporates expression data as covariates.

PAPPSOms++ is a comprehensive C++ library including usefull functions to handle proteomics data (spectrum, peptides, ions, isotopes).

A demo-genetic individual-based model for Atlantic salmon populations

pydynamics, a code to write vle models in python language.

RECORD platform Web Development - espace de développements Web de la plate-forme RECORD effectués autour de modèles RECORD (prototype d'outil, réutilisabilité de code).

Model to simulate the spread of Map within and between herds via trade movements between dairy herds. Some control measures can be applied. Model is mechanistic and data-driven, stochastic, discrete-time and individual-based.

Getting sequences flanking blat hits / Extraction des séquences flanquantes les hits blat.