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Pipeline Nextflow

Interekt (INTERactive Exploration of Kinematics and Tropisms) is a user-friendly software for tracking and modeling plant motions.

metagWGS is a workflow dedicated to the analysis of metagenomic data. It allows assembly, taxonomic annotation, and functional annotation of predicted genes. Since release 2.3, binning step with the possibility of cross-alignment is included. It has been developed in collaboration with several CATI BIOS4biol agents. Funded by Antiselfish Project (Labex Ecofect), ExpoMicoPig project (France Futur elevage) and SeqOccIn project (CPER - Occitanie Toulouse / FEDER), ATB_Biofilm funded by PNREST Anses, France genomique (ANR-10-INBS-09-08) and Resalab Ouest.

PAPPSOms++ is a comprehensive C++ library including useful functions to handle mass spectrometric data, either in a proteomics setting or for data visualization. Abstractions include peptides, proteins, isotopic clusters, mass/drift spectra...

Hosts the different implementation of EDA model

Site web de MIAT, avec wowchemy (hugo).

Pour voir vos modifications après un commit, la preview du site web est là : https://miat-com.pages.mia.inra.fr/miat_website

Assignez vos merges requests pour qu'elles soient passés sur le "vrai" site web, à votre correspondant d'équipe : @benjamin.linard, @gauthier.quesnel, @philippe.bordron ou @rtrepos

A JETER (ancien ESSAI GITLAB-CI.YAML)

Annotation pipeline (transform SGBDR/CSV data to rdf)

Bibliothèque Java pour calculer des indicateurs agro- et éco-climatiques à partir de données climatiques journalières ou horaires et des donnés phénologiques. Un des modèles phénologiques peut être utilisé à la place des données phénologiques. (Documentation en ligne)

DataDiscovery aims at providing researchers a simple and fast access to relevant biological data using specific keywords and easy to use filters.

This tool is expected to be easily customizable for specific filters, environments, or data schemas.

Nextflow pipeline creating a Neo4j Ortho_KB database.

Modifications of GTNash for code readability - readability is entirely subjective! The original functionality should remain the same.