GitLab

Link to running app: https://matrixapp.sk8.inrae.fr

MATRiX is a shiny application dedicated to Mining and Analysis of Transcriptomics data using common biostatistic result files (statistical test result table, normalised data table and samples-groups information). This application helps biologists to perform data exploration with PCA, Venn diagrams, StripCharts, volcanoplots, and Heatmap clustering of genes lists (selecting statistical thresholds) and functional enrichment analyses using a connection to enrichr. https://matrixapp.sk8.inrae.fr

Package R with a shiny interface to run an interactive differential gene/region expression analysis.

FAIDARE: FAIR Data-finder for Agronomic Research

It provides web services (based on the BrAPI standard) and a web interface with easy to use filters to facilitates the access to plant datasets from a federation of sources.

Hosts the different implementation of EDA model

DataDiscovery aims at providing researchers a simple and fast access to relevant biological data using specific keywords and easy to use filters.

This tool is expected to be easily customizable for specific filters, environments, or data schemas.

ws web services

Code storage Area of the RECORD Project packages.

ESKRIM: EStimate with K-mers the RIchness in a Microbiome

A library of Cost Function Networks and other graphical model instances (MRF, PWMaxSat,...).

Projet de la version V2 de l'application des ORE.

Le projet est constitué de 2 sous projet :

La partie serveur qui fournit les web services de l'application

La partie UI qui fournit une interface VueJS permettant d'interroger ces Web Service

Construction and Analysis of Protein-Protein Interactions (PPI) NETWORKS for complexes and biological processes