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HIPL stands for heavy isotope protein labelling. It is basically a project where we use IsoSpecPy for simulating isotopic clusters of peptides that were labelled with 15N.
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metagWGS is a workflow dedicated to the analysis of metagenomic data. It allows assembly, taxonomic annotation, and functional annotation of predicted genes. It has been developed in collaboration with several CATI BIOS4biol agents.
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Projet de la version V2 de l'application des ORE.
Le projet est constitué de 2 sous projet :
La partie serveur qui fournit les web services de l'application
La partie UI qui fournit une interface VueJS permettant d'interroger ces Web Service
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ICEscreen tool for the detection of ICEs and IMEs in Firmicutes genomes.
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A presentation and day book area.
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A library of Cost Function Networks and other graphical model instances (MRF, PWMaxSat,...).
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Requirements and design of a R package for analysing data from Mark-Capture-Recapture experiments for the effective management of invasive Aedes mosquitoes.
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Implementation of the deterministic model of the intestinal including microbiota, as described in Darrigade et al., 'A PDMP model of the epithelial cell turn-over in the intestinal crypt including microbiota-derived regulations.' (2021).
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Dépôt publique de documentation de référence sur logiciels, méthodes ou pratiques pour les chercheurs, collaborateurs et étudiants de l'UMR ASTRE. Contact : facundo.munoz@cirad.fr
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Oxford Nanopore and Bionano Genomics technologies evaluation for plant structural variations detection.
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Structural Variation detection using SNiP genotyping data in R
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