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Coupling crops models with populations dynamics models in heterogeneous and dynamics landscapes.

pydynamics, a code to write vle models in python language.

erecord web services, web solutions for VLE models of RECORD platform

Ontologies

The development of RootStemExtractor has been moved to https://forgemia.inra.fr/felix.hartmann/interekt

A library of Cost Function Networks and other graphical model instances (MRF, PWMaxSat,...).

mechanistic-statistical environement

https://olivier.bonnefon.pages.mia.inra.fr/mse/

To track modifications on a galaxy instance, in our way to design a production frame.

metagWGS is a workflow dedicated to the analysis of metagenomic data. It allows assembly, taxonomic annotation, and functional annotation of predicted genes. Since release 2.3, binning step with the possibility of cross-alignment is included. It has been developed in collaboration with several CATI BIOS4biol agents. Funded by Antiselfish Project (Labex Ecofect), ExpoMicoPig project (France Futur elevage) and SeqOccIn project (CPER - Occitanie Toulouse / FEDER), ATB_Biofilm funded by PNREST Anses, France genomique (ANR-10-INBS-09-08) and Resalab Ouest.

Pompd: Positive Multistate Protein Design

simulateur de l'invasion du moustique Aedes

Explores a neo4j database according to some application logic

X!TandemPipeline is a free software (GPL v3) that helps you to filter and group your peptide/protein identifications from MS/MS mass spectra.

Publication: J. Proteome Res. 2017, 16, 2, 494–503 -- https://doi.org/10.102

Pipeline used to tranfert gene annotation (GFF3) between different versions of assemblies.