Explore projects

Package R with a shiny interface to run an interactive differential gene/region expression analysis.

A method to compare a clustering to a classification with ordinal classes.

X!TandemPipeline is a free software (GPL v3) that helps you to filter and group your peptide/protein identifications from MS/MS mass spectra.

Publication: J. Proteome Res. 2017, 16, 2, 494–503 -- https://doi.org/10.102

code de couplage 2d/1d sur le paysage SELOMMES

Package for BreedWheat Genomic Selection pipeline

SHiNeMaS is a database with its web interface, dedicated to the management of the history of seed lots and related data like phenotyping, environment and cultural practices. SHiNeMaS is freely available under GNU Affero GPL Licence

Estimate the spread-rate of epidemics https://umr-astre.pages.mia.inra.fr/spreadrate/

Networks/graphs with geo-localised nodes https://umr-astre.pages.mia.inra.fr/geonetwork/

Source code for shiny app PEREpigenomics: Profile Explorer of Roadmap Epigenomics data Pre-processing scritps: https://github.com/gdevailly/perepigenomicsAnalysis

Produce an epidemiological risk map by weighting multiple risk factors. https://umr-astre.pages.mia.inra.fr/mapMCDA/

Match toponyms by similarity

A simple R package to create specific license waivers to add in Dataverse

Multiple is a program for de novo discovery of DNA motifs corresponding to Transcription Factor binding sites based on a probabilistic model of the DNA sequence that incorporates expression data as covariates.