Maintenance - Mise à jour Mardi 5 Décembre entre 7h00 et 9h00
A new user-friendly metabarcoding pipeline for the characterization of microbial diversity from 16S, 18S, 23S rRNA genes amplicons DOI: 10.5281/zenodo.3678129
"clariTE.pl" is a program that post process the xm output file of RepeatMasker.
Modified of the code CleaveLand to have the results for all isoforms.
CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets. Addo-Quaye C &. Bioinformatics.
Adaptation of miRDeep220.127.116.11 for dicotyledons, with replaced scripts in which parameters were optimized for dicot plants.
This parameters come from Characterization of statistical features for plant microRNA prediction-Thakur V &al -BMC Genomics
DRAP is a De novo Rna Assembly Pipeline allowing to clean and filter RNA-seq De novo assemblers results to get the most compact and complete set of transcripts.
A gene finding software for eukaryotic and prokaryotic organisms.
Family-Companion: analyse, visualise, browse, query and share your homology clusters Ludovic Cottret, Corinne Rancurel, Martial Briand, Sebastien Carrere BioArxiv, doi: https://doi.org/10.1101/266742
All scripts concerning GBS analysis