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GeT-nextflow-NGL-Bi / wf-Illumina-nf
CeCILL Free Software License Agreement v2.1Pipeline Nextflow
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A new user-friendly metabarcoding pipeline for the characterization of microbial diversity from 16S, 18S, 23S rRNA genes amplicons DOI: 10.5281/zenodo.3678129
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UMR GDEC / axiom-tabw420k
GNU Affero General Public License v3.0Updated -
LIPME / Nicknames Pipeline
Apache License 2.0A pipeline to compute correspondance tables between genome annotations
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NGSPipelines integrates pipelines and user interfaces to help biologists to analyse data outputed from biological applications such as RNA-seq, sRNA-seq, Chip-Seq, BS-seq, and so on.
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Philippe Bardou / GEGA
GNU General Public License v3.0 or laterGEGA - Gallus Enriched Gene Annotation - Easily explore the richness of the chicken genome
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UMR GDEC / CLARI-TE_smk
GNU Affero General Public License v3.0Updated -
bios4biol / intronSeeker
GNU General Public License v3.0 or laterUpdated -
DUGAT-BONY Eric / Cheese_virome
Creative Commons Attribution Share Alike 4.0 InternationalUpdated -
scripts to remap markers as pairs of bait sequences or context sequences.
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Tutorial example for creation of a snakemake workflow using a singularity container on a hpc
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UTOPIA: an automatically UpdaTed, cOmPlete and consistent ITS reference dAtabase
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