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Pipeline Nextflow

UTOPIA: an automatically UpdaTed, cOmPlete and consistent ITS reference dAtabase

All scripts concerning GBS analysis

A new user-friendly metabarcoding pipeline for the characterization of microbial diversity from 16S, 18S, 23S rRNA genes amplicons DOI: 10.5281/zenodo.3678129

NGSPipelines integrates pipelines and user interfaces to help biologists to analyse data outputed from biological applications such as RNA-seq, sRNA-seq, Chip-Seq, BS-seq, and so on.

The software enable to retrieve information (exon boundaries, mutation effect, known SNP...) about transcribed SNP. It's based on ensembl API.

"clariTE.pl" is a program that post process the xm output file of RepeatMasker.

Tutorial example for creation of a snakemake workflow using a singularity container on a hpc

Oxford Nanopore and Bionano Genomics technologies evaluation for plant structural variations detection.

Family-Companion: analyse, visualise, browse, query and share your homology clusters Ludovic Cottret, Corinne Rancurel, Martial Briand, Sebastien Carrere BioArxiv, doi: https://doi.org/10.1101/266742