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pyotb is a library that enables easy use of the Orfeo Tool Box (OTB) in Python

Le camp de base du Café Forge

Retranscription d'audio en txt

GenoFig is a tool for graphical vizualisation of annotated genetic regions, and homologous regions comparison. It was designed to be as easy to use as possible for biologists.

Pipeline used to tranfert gene annotation (GFF3) between different versions of assemblies.

panTEannot serially annotates transposable elements from multiple genomes using a common reference library. The annotation is a light version of TEannot from REPET package. These annotations can be used as input for the panREPET tool.

panREPET is a pipeline detecting shared Transposable Element (TE) insertions among a pangenome. It takes in charge multiple de novo whole-genome assemblies of the same species. It compares TE copies between each pair of genomes then identifies TE copies shared by a group of individuals.

List of workflows (nextflow/snakemake) tested for Genotoul Cluster.

Electron Desktop App For Bisulfite Sequencing Processing Software (BiSePS)

Ensemble de scripts utilisés au LRF pour traiter les données d'amplicon sequencing 16S et ITS.

Server : https://shiny.migale.inrae.fr/app/easy16S | Doc : https://easy16s.migale.inrae.fr/

A quick and dirty beamer theme for INRAE

A static web site to present the team

Présentation de git et de son écosystème dans le cadre des rencontres ingénieurs statisticiens de Toulouse (dec. 2021).