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genotoul-bioinfo / metagWGS
GNU General Public License v3.0 onlymetagWGS is a workflow dedicated to the analysis of metagenomic data. It allows assembly, taxonomic annotation, and functional annotation of predicted genes. Since release 2.3, binning step with the possibility of cross-alignment is included. It has been developed in collaboration with several CATI BIOS4biol agents. Funded by Antiselfish Project (Labex Ecofect), ExpoMicoPig project (France Futur elevage) and SeqOccIn project (CPER - Occitanie Toulouse / FEDER), ATB_Biofilm funded by PNREST Anses, France genomique (ANR-10-INBS-09-08) and Resalab Ouest.
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GeT-nextflow-NGL-Bi / template-nf
CeCILL Free Software License Agreement v2.1Updated -
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MIAT-Com / Site web MIAT
MIT LicenseSite web de MIAT, avec wowchemy (hugo).
Pour voir vos modifications après un commit, la preview du site web est là : https://miat-com.pages.mia.inra.fr/miat_website
Assignez vos merges requests pour qu'elles soient passés sur le "vrai" site web, à votre correspondant d'équipe : @samuel.buchet, @gauthier.quesnel, @philippe.bordron ou @rtrepos
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BIOGER / ingenannot
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inter_CATI_omics / Hackathon_octobre2021 / hackathon_DataScience_2021
GNU Affero General Public License v3.0Updated -
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genotoul-bioinfo / d-genies / D-GENIES
GNU General Public License v3.0 or laterDotplot large Genomes in an Interactive, Efficient and Simple way
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asm4pg / GenomAsm4pg
GNU Affero General Public License v3.0Updated -
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UMR SADAPT / Python RPG Explorer
GNU General Public License v3.0 or laterUpdated -
PGBA_public / GenoFig
GNU General Public License v3.0 or laterGenoFig is a tool for graphical vizualisation of annotated genetic regions, and homologous regions comparison. It was designed to be as easy to use as possible for biologists.
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UMR GDEC / magatt
GNU General Public License v3.0 or laterPipeline used to tranfert gene annotation (GFF3) between different versions of assemblies.
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URGI-Anagen / panTEannot
CeCILL Free Software License Agreement v2.0panTEannot serially annotates transposable elements from multiple genomes using a common reference library. The annotation is a light version of TEannot from REPET package. These annotations can be used as input for the panREPET tool.
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List of workflows (nextflow/snakemake) tested for Genotoul Cluster.
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