Explore projects

Adaptation of miRDeep2.0.0.5 for dicotyledons, with replaced scripts in which parameters were optimized for dicot plants. This parameters come from Characterization of statistical features for plant microRNA prediction-Thakur V &al -BMC Genomics

A new user-friendly metabarcoding pipeline for the characterization of microbial diversity from 16S, 18S, 23S rRNA genes amplicons DOI: 10.5281/zenodo.3678129

Tutorial example for creation of a snakemake workflow using a singularity container on a hpc

Some scripts for the methylation analysis of the ChickStress project.

Pipeline for annotating VHHs from NGS sequences.

Family-Companion: analyse, visualise, browse, query and share your homology clusters Ludovic Cottret, Corinne Rancurel, Martial Briand, Sebastien Carrere BioArxiv, doi: https://doi.org/10.1101/266742

A set of population genomic scripts and utilities.

Source code for https://iant.toulouse.inra.fr/T3E

Oxford Nanopore and Bionano Genomics technologies evaluation for plant structural variations detection.

report from a BAM alignment the number of BX:Z: tags shared between to blocks of given size

All scripts concerning GBS analysis

GEGA - Gallus Enriched Gene Annotation - Easily explore the richness of the chicken genome