Explore projects
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umrf / ExploreMetabar
MIT LicenseUpdated -
umrf / dairydb
GNU General Public License v3.0 onlyUpdated -
migale / Easy16S
GNU Affero General Public License v3.0Updated -
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mixKernel is a multiple kernel framework that allows to integrate multiple datasets of various types into a single analysis. The package is published on CRAN: https://cran.r-project.org/package=mixKernel
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TEISSEIRE EMMA / rosepigs_stomach
MIT LicenseRNAseq and EMseq analyses for the rosepigs project on stomach mucosa samples
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Sandra Pelletier / transcriptomic_analysis_ed-vaam
Creative Commons Attribution Non Commercial 4.0 InternationalUpdated -
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Contains code to create and manage the SUDOANG rivers database
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Link to running app: https://matrixapp.sk8.inrae.fr
MATRiX is a shiny application dedicated to Mining and Analysis of Transcriptomics data using common biostatistic result files (statistical test result table, normalised data table and samples-groups information). This application helps biologists to perform data exploration with PCA, Venn diagrams, StripCharts, volcanoplots, and Heatmap clustering of genes lists (selecting statistical thresholds) and functional enrichment analyses using a connection to enrichr. https://matrixapp.sk8.inrae.fr
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SAMBA (R) est une interface pour analyser les résultats de sampling de réseaux métaboliques générés à partir de SAMBApy sous Python. Elle est composée d'une une partie comparaison (calcul de différence) et une partie visualisation graphique des résultats.
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VANRENTERGHEM Théodore / ShinySbm
MIT LicenseshinySbm is a package containing a shiny application. This application is build for network analysis based on the sbm package made by Chiquet J, Donnet S and Barbillon P (2023) CRAN. It allow to apply and explore the outputs of a Stochastic Block Model. It is useful if you want to analyse your data (could be adjacency matrix or edges list) without R language knowledge or to learn the basic lines of the sbm package.
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Exploration interactive de scenario de simulation du modèle MF1.2-1ha du projet Atcha.
https://mf-12-1-ha.sk8.inrae.fr/ | https://shiny.sk8.inrae.fr/app/atcha-mf-12-1-ha | https://shiny.sk8.inrae.fr/app_direct/atcha-mf-12-1-ha
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JAUNATRE MAXIME / matreex
MIT LicenseLESSEM internal package for simulation of forest dynamic depending on climatic variables
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UREP / Outils de développement / R utilities / UREP R utilities - r4UREP
BSD 3-Clause "New" or "Revised" LicenseAn R package with globally useful function for UREP R developments
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lidar / lidarHD
GNU General Public License v3.0 or laterUpdated