Commits · 76659a235ee0b33accba644dc87e054d3188d249 · UMR GDEC / magatt

Helene Rimbert authored 4 years ago

now the nomenclature of the new geen ids can be setup in the config.yaml file. Also 2 new rules to compile the blat results and the anchoring summary

76659a23

May 29, 2020
- all gmap anchoring integrated into the final HC and LC gff instead of a third _rescue.gff3 file · e51b6a52
  Helene Rimbert authored 4 years ago
  
  e51b6a52
May 28, 2020
- 1st dev fial version · 08268dae
  Helene Rimbert authored 4 years ago
  
  v0.1
  
  08268dae
May 14, 2020
- convertion of the gff file from GMAP after the rescue of misaligned genes is OK. · d0910f29
  Helene Rimbert authored 4 years ago
  
  d0910f29
May 06, 2020
- add chromosome name in message of rulegmapRescue · 31eb2bd0
  Helene Rimbert authored 4 years ago
  
  31eb2bd0
May 04, 2020
- BUG: new rule to deal with genes without valid pair of markers · 168392a6
  Helene Rimbert authored 4 years ago
  
  168392a6
Feb 10, 2020

Helene Rimbert authored 5 years ago

bug in  mapHomologousRegions shell command: need to use {wildcards.chrom} instead of {chrom} in the shell to properly expand the chrom variable

55131a1a

Jan 17, 2020
- Final version of blatMapping pipeline · 13be85a0
  Helene Rimbert authored 5 years ago
  
  13be85a0
Dec 20, 2019
- add result directory to gitignore file, remove markersIds from mapping pipeline · 7465d454
  Helene Rimbert authored 5 years ago
  
  7465d454
Dec 17, 2019
- new snakemake rule geneAnchoring.smk · 16d31b3b
  Helene Rimbert authored 5 years ago
  
  16d31b3b