diff --git a/bin/microMappingPipeline.py b/bin/microMappingPipeline.py index 04c99b67c0e40673e22ac1d1c0e84b3ebaa277ef..f9411635f9784d238c092bb5a83c9aee07915a22 100755 --- a/bin/microMappingPipeline.py +++ b/bin/microMappingPipeline.py @@ -1,4 +1,4 @@ -#!/usr/bin/env python3 +#!/usr/bin/env python3.5 # coding: utf-8 import os.path from os import path diff --git a/bin/recalcCoordsFromBlat.py b/bin/recalcCoordsFromBlat.py index 102ee98aa7aa134b423408edd81311da5a60c1bf..d0b9e8c9eaddfe92cd1e79733d444c0e4c6e5336 100755 --- a/bin/recalcCoordsFromBlat.py +++ b/bin/recalcCoordsFromBlat.py @@ -1,4 +1,4 @@ -#!/usr/bin/env python3 +#!/usr/bin/env python3.5 # coding: utf-8 import os.path from os import path diff --git a/rules/preprocessISBP.smk b/rules/preprocessISBP.smk index f80cf3d195cd182f48c66745c394e041c8fa8b68..c4542f124140741f31282a93e29d350cd27bef24 100644 --- a/rules/preprocessISBP.smk +++ b/rules/preprocessISBP.smk @@ -4,7 +4,7 @@ rule filterBam: output: temp(config['results']+'/1.filteredISBPs.bam') params: mapq=config['mapq'], mismatches=config['mismatches'] log: config['results']+'/1.filterBam.log' - shell: "bin/filterBam.py {input} {output} {params.mapq} {params.mismatches} 1> {log}" + shell: "bin/filterBam.py {input} {output} {params.mapq} {params.mismatches} &> {log}" rule bam2bed: message: "Convert Filtered BAM file into BED"