Commits · 093720f307f557f34524a56ef6e9eb81f0734335 · SVdetection / svlib

Dec 11, 2019
- Merge branch 'newfilter' of forgemia.inra.fr:svdetection/svlib into newfilter · 093720f3
  Thomas Faraut authored 5 years ago
  
  093720f3
- new implementation of annotation using vcfwrapper · affa74ae
  Thomas Faraut authored 5 years ago
  
  affa74ae
- Annotate.py -> annotation.py · eee7d713
  Thomas Faraut authored 5 years ago
  
  eee7d713
- supp_reads becomes max support reads · ecdbdde9
  Thomas Faraut authored 5 years ago
  
  ecdbdde9
- modified annotation · 4645bf7c
  Thomas Faraut authored 5 years ago
  
  4645bf7c
- Annotate uses SVReader · bf4fba45
  Thomas Faraut authored 5 years ago
  
  bf4fba45
- AnnotatedRecord.py becomes Annotate.py · 97b731db
  Thomas Faraut authored 5 years ago
  
  97b731db
- adding AnnotatedRecord · 2a79d626
  Thomas Faraut authored 5 years ago
  
  2a79d626
- new pindel specific filter · f05a09b4
  Thomas Faraut authored 5 years ago
  
  f05a09b4
- Annotate uses SVReader · b8a52132
  Thomas Faraut authored 5 years ago
  
  b8a52132
- AnnotatedRecord.py becomes Annotate.py · 55e26b87
  Thomas Faraut authored 5 years ago
  
  55e26b87
- adding AnnotatedRecord · ccb2602f
  Thomas Faraut authored 5 years ago
  
  ccb2602f
- Resolved merge conflict pindel specific filter · 7f52e9e3
  Thomas Faraut authored 5 years ago
  
  7f52e9e3
Dec 10, 2019
- annotating tools and some corrections · aa96035d
  Thomas Faraut authored 5 years ago
  
  aa96035d
Dec 03, 2019
- adding duplicate informations with the new identifiers · a47a5d83
  Thomas Faraut authored 5 years ago
  
  a47a5d83
Nov 29, 2019
- new implementation of annotation using vcfwrapper · 4f118e1d
  Thomas Faraut authored 5 years ago
  
  4f118e1d
- Annotate.py -> annotation.py · 5eff6941
  Thomas Faraut authored 5 years ago
  
  5eff6941
Nov 28, 2019
- supp_reads becomes max support reads · 7840de6c
  Thomas Faraut authored 5 years ago
  
  7840de6c
Nov 27, 2019
- Merge branch 'newfilter' of forgemia.inra.fr:svdetection/svlib into newfilter · 6f2a249e
  Thomas Faraut authored 5 years ago
  
  6f2a249e
- modified annotation · 85d17402
  Thomas Faraut authored 5 years ago
  
  85d17402
- Annotate uses SVReader · 3ab9cd8e
  Thomas Faraut authored 5 years ago
  
  3ab9cd8e
- AnnotatedRecord.py becomes Annotate.py · b36c3609
  Thomas Faraut authored 5 years ago
  
  b36c3609
- adding AnnotatedRecord · dddad31d
  Thomas Faraut authored 5 years ago
  
  dddad31d
- new pindel specific filter · 68b5c6df
  Thomas Faraut authored 5 years ago
  
  68b5c6df
- Annotate uses SVReader · d26a53fe
  Thomas Faraut authored 5 years ago
  
  d26a53fe
- AnnotatedRecord.py becomes Annotate.py · 96ab3af1
  Thomas Faraut authored 5 years ago
  
  96ab3af1
- new svreader · 4ed7e17f
  Thomas Faraut authored 5 years ago
  
  4ed7e17f
- adding AnnotatedRecord · 8ece2341
  Thomas Faraut authored 5 years ago
  
  8ece2341
- modify pindel specific filter · cc7adfec
  Thomas Faraut authored 5 years ago
  
  cc7adfec
Nov 26, 2019
- merging works now for a single file · 8d032924
  Thomas Faraut authored 5 years ago
  
  8d032924
Nov 22, 2019
- corrected pindel filter · 0de3d4d1
  Thomas Faraut authored 5 years ago
  
  0de3d4d1
Oct 31, 2019
- new pindel specific filter · a65df1e7
  Thomas Faraut authored 5 years ago
  
  a65df1e7
Sep 10, 2019
- POLYMORPH becomes MONOMORH · b689588e
  Thomas Faraut authored 5 years ago
  
  b689588e
Jul 09, 2019
- updating lib · 748634c1
  Thomas Faraut authored 5 years ago
  
  748634c1
- bob · 37b1eee9
  Thomas Faraut authored 5 years ago
  
  37b1eee9
- adding svtyper_utils · 15f5c616
  Thomas Faraut authored 5 years ago
  
  15f5c616
Jul 08, 2019
- svrunner_utils.py compatible py27 and py36 · 42ac8f47
  Thomas Faraut authored 5 years ago
  
  42ac8f47
Feb 15, 2019
- Back to the correct definition of QUAL colunm: -10 * log(P(locus is reference is all samples)) · 387deb81
  Thomas Faraut authored 6 years ago
  
  387deb81
Dec 04, 2018
- - removing filtering for gaps for genomestrip · 814c02a2
  Thomas Faraut authored 6 years ago
  
  - intersect is now required to be reciprocal for duplicate reoval
  814c02a2
Oct 19, 2018
- adding batch id to record id · 070ff8a5
  Thomas Faraut authored 6 years ago
  
  070ff8a5

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