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Commit f05a09b4 authored by Thomas Faraut's avatar Thomas Faraut
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new pindel specific filter

parent b8a52132
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......@@ -388,7 +388,6 @@ class PindelReader(SVReader):
# # Sudmant et al 2015 SuppInfo
# return (record.length() > 60)
def SpecificFilterPass(self, record):
# fILTER
if record.length() >= 800 or record.length() <= 60:
return False
elif record.MaxIndividualSupport() <= 3:
......@@ -396,7 +395,6 @@ class PindelReader(SVReader):
else:
return True
def remove_duplicate(self, records):
"""
returns a vector of records where duplicates were removed
......
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