From f05a09b48c1550875c1887f3bd59d1e3e972368b Mon Sep 17 00:00:00 2001
From: Thomas Faraut <Thomas.Faraut@inra.fr>
Date: Thu, 31 Oct 2019 14:16:32 +0100
Subject: [PATCH] new pindel specific filter
---
svreader/pindel.py | 2 --
1 file changed, 2 deletions(-)
diff --git a/svreader/pindel.py b/svreader/pindel.py
index e5a6ffe..30d3357 100644
--- a/svreader/pindel.py
+++ b/svreader/pindel.py
@@ -388,7 +388,6 @@ class PindelReader(SVReader):
# # Sudmant et al 2015 SuppInfo
# return (record.length() > 60)
def SpecificFilterPass(self, record):
- # fILTER
if record.length() >= 800 or record.length() <= 60:
return False
elif record.MaxIndividualSupport() <= 3:
@@ -396,7 +395,6 @@ class PindelReader(SVReader):
else:
return True
-
def remove_duplicate(self, records):
"""
returns a vector of records where duplicates were removed
--
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