Fix variantfile as pysam

genotype_results.py

@@ -29,7 +29,7 @@ def passed_variant(record):
 def readgenotypes(vcffile: str, variants: dict, type_v, dofilter: bool=False):
     vcfin = VariantFile(vcffile)
     for r in vcfin:
-        if (not dofilter or passed_variant(r)) and r.sv_type.lower() == type_v:
+        if (not dofilter or passed_variant(r)) and r.alts[0][1:-1].lower() == type_v:
             variants[r.id] = r
     return variants