Commits · d93f669bf0b16e9d331e3d59e161ad9c2a96a024 · SVdetection / cnvpipelines

Nov 26, 2019
- starting new filter branch with annotate · d93f669b
  Thomas Faraut authored 5 years ago
  
  d93f669b
Nov 22, 2019
- updating lib · 06e7b327
  Thomas Faraut authored 5 years ago
  
  06e7b327
Nov 21, 2019
- Minor correction in refbundle.smk · 5dcb5f9e
  Mathieu Charles authored 5 years ago
  
  5dcb5f9e
- Ancient keyword in refbundle · 85245f02
  Mathieu Charles authored 5 years ago
  
  85245f02
- Merge branch 'master' of forgemia.inra.fr:svdetection/cnvpipelines · deaf7a4f
  Mathieu Charles authored 5 years ago
  
  Add juptyer summary for detection and simulation Add R-base in environment
  deaf7a4f
- add keyword ancient in refbundle and add libiconv in environment.yaml · 288d5ac0
  Mathieu Charles authored 5 years ago
  
  288d5ac0
Nov 18, 2019
- updating popsim · fd872c89
  Thomas Faraut authored 5 years ago
  
  fd872c89
- Adding jupyter report for simulation and detection · 9e05e59b
  Mathieu Charles authored 5 years ago
  
  9e05e59b
Nov 12, 2019
- builpop becomes buildpop · 17412c23
  Thomas Faraut authored 5 years ago
  
  17412c23
Oct 30, 2019
- updating popsim · 14e218b7
  Thomas Faraut authored 5 years ago
  
  14e218b7
Oct 09, 2019
- Update README.md · 4ab2f532
  Thomas Faraut authored 5 years ago
  
  4ab2f532
- Update README.md · fdc50be3
  Thomas Faraut authored 5 years ago
  
  fdc50be3
Oct 04, 2019
- nb_start_batch no set to 1 for mergebatches · 53cf7062
  Thomas Faraut authored 5 years ago
  
  53cf7062
Oct 01, 2019
- enabling binomial species name · 67c29629
  Thomas Faraut authored 5 years ago
  
  67c29629
Sep 27, 2019
- Merge branch 'master' of forgemia.inra.fr:svdetection/cnvpipelines · 4cb19129
  Thomas Faraut authored 5 years ago
  
  4cb19129
- - help is now provided when cnvpipelines.py script is launched without arguments (commands) · 685ca543
  Thomas Faraut authored 5 years ago
  
  - clean and soft-clean now works with rerun
  685ca543
- Update README.md · f7b1d587
  Thomas Faraut authored 5 years ago
  
  f7b1d587
- Update README.md · c75bc965
  Thomas Faraut authored 5 years ago
  
  c75bc965
- Update README.md · 4ccd52f8
  Thomas Faraut authored 5 years ago
  
  4ccd52f8
Sep 24, 2019
- adding start_batch_nb · 9a1b6e6d
  Thomas Faraut authored 5 years ago
  
  9a1b6e6d
Sep 23, 2019
- lumpy now requests 24Gb of memory · 3d3c9dc5
  Thomas Faraut authored 5 years ago
  
  3d3c9dc5
Sep 13, 2019
- Update README.md · a9ccc272
  Thomas Faraut authored 5 years ago
  
  a9ccc272
Sep 12, 2019
- Update README.md · 8fed4940
  Thomas Faraut authored 5 years ago
  
  8fed4940
- Update README.md · bac79e7a
  Thomas Faraut authored 5 years ago
  
  bac79e7a
- Update README.md · 31c464d2
  Thomas Faraut authored 5 years ago
  
  31c464d2
- Update README.md · d697009d
  Thomas Faraut authored 5 years ago
  
  d697009d
- Update README.md · 1d2578f0
  Thomas Faraut authored 5 years ago
  
  1d2578f0
- adding a genologin specific application properties · 9fb62f0c
  Thomas Faraut authored 5 years ago
  
  9fb62f0c
- adding svtypes.smk · 0f0bf74d
  Thomas Faraut authored 5 years ago
  
  0f0bf74d
Sep 11, 2019
- read group fixed · 865070cd
  Thomas Faraut authored 5 years ago
  
  865070cd
- get samples with batches · a7192ea3
  Thomas Faraut authored 5 years ago
  
  a7192ea3
Sep 10, 2019
- Merge branch 'refactor' · c509209f
  Thomas Faraut authored 5 years ago
  
  c509209f
- movin common.smk · 5fb94f26
  Thomas Faraut authored 5 years ago
  
  5fb94f26
- resolved conflict · 04241a90
  Thomas Faraut authored 5 years ago
  
  04241a90
- popsim fastq and fasta files are now temporary · e3bb89b7
  Thomas Faraut authored 5 years ago
  
  e3bb89b7
- made a file executable · a4750268
  Thomas Faraut authored 5 years ago
  
  a4750268
- adding popsimulation.smk · c4fa05a7
  Thomas Faraut authored 5 years ago
  
  c4fa05a7
- get_batches in mergebatch kept as the old version · 700e6ad1
  Thomas Faraut authored 5 years ago
  
  700e6ad1
- megebatches functionnal · 12125ec3
  Thomas Faraut authored 5 years ago
  
  12125ec3
- Preparing for simulation work-flow. · 7fe0baea
  Thomas Faraut authored 5 years ago
  
  Remaining problem commes from reference sequence "reference.fasta" absent at the beginning of the workflow.
  7fe0baea

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