Commits · d21d3343205417a3b4a4c95c42d10bb86f60d1c7 · SVdetection / cnvpipelines

Jul 30, 2018
- Remove also fai file · d21d3343
  Floreal Cabanettes authored 6 years ago
  
  d21d3343
- Try fix: remove raw reference once final one is build · a70595d4
  Floreal Cabanettes authored 6 years ago
  
  a70595d4
Jul 25, 2018
- Make bwa bams (before markduplicate) as temporary files · cd2e0a6a
  Floreal Cabanettes authored 6 years ago
  
  cd2e0a6a
Jul 23, 2018
- Fix genomestrip rerun · dc13d884
  Floreal Cabanettes authored 6 years ago
  
  dc13d884
- Add reason of each executed rule option to the wrapper (2) · 1deda6e2
  Floreal Cabanettes authored 6 years ago
  
  1deda6e2
- Fix reason option · 82b288ee
  Floreal Cabanettes authored 6 years ago
  
  82b288ee
- Add reason of each executed rule option to the wrapper · 10f54aee
  Floreal Cabanettes authored 6 years ago
  
  10f54aee
Jul 20, 2018
- Fix crash · 5163583f
  Floreal Cabanettes authored 6 years ago
  
  5163583f
- Fix chromosomes with no reads for lumpy · 96f3d4d0
  Floreal Cabanettes authored 6 years ago
  
  96f3d4d0
- Fix syntax · 7fd9cbca
  Floreal Cabanettes authored 6 years ago
  
  7fd9cbca
- Try another approach to fix the problem · 76fd6d52
  Floreal Cabanettes authored 6 years ago
  
  76fd6d52
- Fix syntax · 0f7dda0c
  Floreal Cabanettes authored 6 years ago
  
  0f7dda0c
- Fix output file not found as input · ed501c4d
  Floreal Cabanettes authored 6 years ago
  
  ed501c4d
Jul 19, 2018
- Fix insert size distro: change to the 100000 first reads instead of reads of a... · 754a702c
  Floreal Cabanettes authored 6 years ago
  
  Fix insert size distro: change to the 100000 first reads instead of reads of a region to fix bug if regions is composed only by N
  754a702c
- Fix reference : use absolute path · 29cd4f16
  Floreal Cabanettes authored 6 years ago
  
  29cd4f16
Jul 18, 2018
- Improve README · cc6052c9
  Floreal Cabanettes authored 6 years ago
  
  cc6052c9
- Fix simulation: if proba of inversion is 0, set min inversion to 0 · 6f7c7f5f
  Floreal Cabanettes authored 6 years ago
  
  6f7c7f5f
- Add check valid for simulation · 4911f1df
  Floreal Cabanettes authored 6 years ago
  
  4911f1df
- Fix simulation workflow · 83d4c223
  Floreal Cabanettes authored 6 years ago
  
  83d4c223
- Fix simulation workflow · ab701991
  Floreal Cabanettes authored 6 years ago
  
  ab701991
- Fix simulation workflow · bbfbaf74
  Floreal Cabanettes authored 6 years ago
  
  bbfbaf74
- Make nb_inds param required for simulation + fix snk syntax · ada50400
  Floreal Cabanettes authored 6 years ago
  
  ada50400
- Fix rule name overlap · 83387ccc
  Floreal Cabanettes authored 6 years ago
  
  83387ccc
- Fix bugs due to new chromosomes filtering · b58a72b9
  Floreal Cabanettes authored 6 years ago
  
  b58a72b9
Jul 12, 2018
- Remove bad fix · 8f5f1d40
  Floreal Cabanettes authored 6 years ago
  
  8f5f1d40
- Fix PEP8 · 06402481
  Floreal Cabanettes authored 6 years ago
  
  06402481
- Fix: allow sample files to be a link · 8526a526
  Floreal Cabanettes authored 6 years ago
  
  8526a526
Jul 06, 2018
- Fix reduces repeatmasker runtime, reset it to default · 84e27dab
  Floreal Cabanettes authored 6 years ago
  
  84e27dab
- Update popsim submodule · 4824edb4
  Floreal Cabanettes authored 6 years ago
  
  4824edb4
- - change filter to noFilter (by default filtering is done) · cea5dca8
  Thomas Faraut authored 6 years ago
  
  - simplify gcmaskbed and lcmaskebed (erferencebundle) - Update submodule snakecnv/lib to latest
  cea5dca8
- Fix repeatmasker mem req + fix cluster spec · 91c55658
  Floreal Cabanettes authored 6 years ago
  
  91c55658
- Fix node specifications · f431e49e
  Floreal Cabanettes authored 6 years ago
  
  f431e49e
- Fix requirements · 3f5dbe9c
  Floreal Cabanettes authored 6 years ago
  
  3f5dbe9c
Jul 04, 2018
- Slurm: force to use only 1 node per job · d21b8d57
  Floreal Cabanettes authored 6 years ago
  
  d21b8d57
- Update to latest popsim · b4ea21b3
  Floreal Cabanettes authored 6 years ago
  
  b4ea21b3
- simply removing unused tmp = os.path.join() in run_refbundle · 4aef9eb6
  Thomas Faraut authored 6 years ago
  
  4aef9eb6
- OK encore un problème de pull push · fdca0407
  Thomas Faraut authored 6 years ago
  
  Merge branch 'master' of forgemia.inra.fr:genotoul-bioinfo/cnvpipelines
  fdca0407
- nstrech bug corrected · 8b7c6c80
  Thomas Faraut authored 6 years ago
  
  8b7c6c80
- Fix nstretches rule · a236335e
  Floreal Cabanettes authored 6 years ago
  
  a236335e
Jul 03, 2018
- Update git clone URL · 3019a2de
  Floreal Cabanettes authored 6 years ago
  
  3019a2de