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Commit 3f5dbe9c authored by Floreal Cabanettes's avatar Floreal Cabanettes
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Fix requirements

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......@@ -12,6 +12,7 @@ This workflow is still in development. For now, only DEL and INV variants are av
## Requirements
All tools used by the workflow must be available in your PATH (can be loaded as modules or added to PATH in config file, see below):
- snakemake >= 4.8
- delly == 0.7.7 or 0.7.6
- lumpy >= 0.2.13
- pindel >= 0.2.5b9
......@@ -20,7 +21,6 @@ All tools used by the workflow must be available in your PATH (can be loaded as
- bedtools >= 2.26.0
- bcftools >= 1.6
- vcftools >= 0.1.11
- parallel
Required for reference bundle:
- RepeatMasker >= 4.0.6
......
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