Commits · b0857fa3deec339d1730df4f239f03d79fff57d0 · SVdetection / cnvpipelines

Jul 05, 2019
- new installation procedures · b0857fa3
  Thomas Faraut authored 5 years ago
  
  b0857fa3
Jul 03, 2019
- updating popsim · 221bea05
  Thomas Faraut authored 5 years ago
  
  221bea05
- Merge branch 'master' of forgemia.inra.fr:svdetection/cnvpipelines · 2d22dbd9
  Thomas Faraut authored 5 years ago
  
  2d22dbd9
- some memory and trhead parameter reconfiguration · dc3fc525
  Thomas Faraut authored 5 years ago
  
  dc3fc525
May 27, 2019
- Merge branch 'devrefbundle' into 'master' · b9727d76
  Thomas Faraut authored 5 years ago
  
  some comestic changes See merge request !13
  b9727d76
- some comestic changes · e8d91743
  Thomas Faraut authored 5 years ago
  
  e8d91743
- some more explicit messages. Correcting positions for gaps · 8c8bba97
  Thomas Faraut authored 5 years ago
  
  8c8bba97
Feb 15, 2019
- Updating lib · f9dacd58
  Thomas Faraut authored 6 years ago
  
  f9dacd58
Feb 05, 2019
- Update popsim ae01d89 · 4947cd8f
  Mathieu Charles authored 6 years ago
  
  4947cd8f
- Duplication support in simulation;Creation of the sample.list containing all... · c1c72ff8
  Mathieu Charles authored 6 years ago
  
  Duplication support in simulation;Creation of the sample.list containing all samples, additionnaly to sample.list.# for batch
  c1c72ff8
Jan 21, 2019
- Update remote popsim URL · a11c6b43
  Celine Noirot authored 6 years ago
  
  a11c6b43
Jan 17, 2019
- removing tab · de542420
  Thomas Faraut authored 6 years ago
  
  de542420
- bwam in cluster.yaml set to 23h, detect_region_to_exclude modified · 9fe53a17
  Thomas Faraut authored 6 years ago
  
  9fe53a17
Dec 14, 2018
- bug correction · a6854300
  Thomas Faraut authored 6 years ago
  
  a6854300
Dec 12, 2018
- - pindel back to --max_range_index 3 · 9b50863b
  Thomas Faraut authored 6 years ago
  
  - gstrip_preprocess now requires 16Gb of memory
  9b50863b
Dec 05, 2018
- removing izip and pysamstats import · e6a8ad6a
  Thomas Faraut authored 6 years ago
  
  e6a8ad6a
Dec 04, 2018
- - delly ex is now mine · 5225e199
  Thomas Faraut authored 6 years ago
  
  - get_regions to exclude uses not mad
  5225e199
- - delly threads downgraded to 6 · fd66bc96
  Thomas Faraut authored 6 years ago
  
  - genomestrip .Nstrech file not any more required - pindel max_xrange 2 removed - excluded is now preformed for each sample
  fd66bc96
- 36 hours for repeatmasker · 9f69701c
  Thomas Faraut authored 6 years ago
  
  9f69701c
- upgrading lib · b0c65c57
  Thomas Faraut authored 6 years ago
  
  b0c65c57
Oct 23, 2018
- modifying cnvpipeline and delly time · 1c6d32ae
  Thomas Faraut authored 6 years ago
  
  1c6d32ae
- now 8 cores for delly · 24b86bc5
  Thomas Faraut authored 6 years ago
  
  24b86bc5
- removing self._rerun_tools(tools) · b4182d5e
  Thomas Faraut authored 6 years ago
  
  b4182d5e
Oct 19, 2018
- cluster without drmaa fixed · 36551b08
  Thomas Faraut authored 6 years ago
  
  36551b08
- adding batch id to record id in parse · 9408978e
  Thomas Faraut authored 6 years ago
  
  9408978e
- popsim · dafce579
  Thomas Faraut authored 6 years ago
  
  dafce579
- updating snakecnv/lib · fc048fbe
  Thomas Faraut authored 6 years ago
  
  fc048fbe
Oct 05, 2018
- patch for getting chromsomes in get_batches · 272bf2f3
  Thomas Faraut authored 6 years ago
  
  272bf2f3
Sep 27, 2018
- updating the lib submodule · 491fa286
  Thomas Faraut authored 6 years ago
  
  491fa286
- - implementing a pure pysam bacoverage instead of the pysamstats implementation · cd6a9624
  Thomas Faraut authored 6 years ago
  
  - window width for the detection of high coverage is now 500bp - simplifying gzip of pindel files
  cd6a9624
Aug 24, 2018
- Update summary ipynb · 13fc368c
  Floreal Cabanettes authored 6 years ago
  
  13fc368c
- Fix summary rule · 2fedb544
  Floreal Cabanettes authored 6 years ago
  
  2fedb544
- Fix input · c3d1baaa
  Floreal Cabanettes authored 6 years ago
  
  c3d1baaa
- Fix variable name · c11772ca
  Floreal Cabanettes authored 6 years ago
  
  c11772ca
- Fix syntac · d1f9176a
  Floreal Cabanettes authored 6 years ago
  
  d1f9176a
- Add summary · a54b7305
  Floreal Cabanettes authored 6 years ago
  
  a54b7305
Aug 23, 2018
- Fix if dry run done before run · 965d4e7e
  Floreal Cabanettes authored 6 years ago
  
  965d4e7e
- Easy dry run if only 1 batch · ee8cb8b6
  Floreal Cabanettes authored 6 years ago
  
  ee8cb8b6
- Upgrade popsim submodule · 41c767ef
  Floreal Cabanettes authored 6 years ago
  
  41c767ef
- Merge branch 'master' of forgemia.inra.fr:genotoul-bioinfo/cnvpipelines · 9ea1b75b
  Thomas Faraut authored 6 years ago
  
  9ea1b75b

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