Fix summary rule

snakecnv/mergebatches.snk

@@ -179,11 +179,13 @@ rule summary:
     input:
         expand("filtered/{svtype}/svtyper_{chrom}_{svtype}_genotypes_filtered.vcf.gz", chrom=chromosomes, svtype=variant_types)
     params:
-        tpl = os.path.join(ROOTPATH, "full.tpl")
+        tpl = os.path.join(ROOTPATH, "full.tpl"),
+        ipynb = os.path.join(ROOTPATH, "Summarized_results.ipynb")
     output:
         ipynb = "Summarized_results.ipynb",
         html = "Summarized_results.html"
     threads:
         1
     shell:
+        "cp {params.ipynb} {output.ipynb}; "
         "jupyter nbconvert --to html --template {params.tpl} --execute {output.ipynb}"
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