Commits · 76fd6d52977bb46b36eed0167ef1f8f5cce0330a · SVdetection / cnvpipelines

Jul 20, 2018
- Try another approach to fix the problem · 76fd6d52
  Floreal Cabanettes authored 6 years ago
  
  76fd6d52
- Fix syntax · 0f7dda0c
  Floreal Cabanettes authored 6 years ago
  
  0f7dda0c
- Fix output file not found as input · ed501c4d
  Floreal Cabanettes authored 6 years ago
  
  ed501c4d
Jul 19, 2018
- Fix insert size distro: change to the 100000 first reads instead of reads of a... · 754a702c
  Floreal Cabanettes authored 6 years ago
  
  Fix insert size distro: change to the 100000 first reads instead of reads of a region to fix bug if regions is composed only by N
  754a702c
- Fix reference : use absolute path · 29cd4f16
  Floreal Cabanettes authored 6 years ago
  
  29cd4f16
Jul 18, 2018
- Improve README · cc6052c9
  Floreal Cabanettes authored 6 years ago
  
  cc6052c9
- Fix simulation: if proba of inversion is 0, set min inversion to 0 · 6f7c7f5f
  Floreal Cabanettes authored 6 years ago
  
  6f7c7f5f
- Add check valid for simulation · 4911f1df
  Floreal Cabanettes authored 6 years ago
  
  4911f1df
- Fix simulation workflow · 83d4c223
  Floreal Cabanettes authored 6 years ago
  
  83d4c223
- Fix simulation workflow · ab701991
  Floreal Cabanettes authored 6 years ago
  
  ab701991
- Fix simulation workflow · bbfbaf74
  Floreal Cabanettes authored 6 years ago
  
  bbfbaf74
- Make nb_inds param required for simulation + fix snk syntax · ada50400
  Floreal Cabanettes authored 6 years ago
  
  ada50400
- Fix rule name overlap · 83387ccc
  Floreal Cabanettes authored 6 years ago
  
  83387ccc
- Fix bugs due to new chromosomes filtering · b58a72b9
  Floreal Cabanettes authored 6 years ago
  
  b58a72b9
Jul 12, 2018
- Remove bad fix · 8f5f1d40
  Floreal Cabanettes authored 6 years ago
  
  8f5f1d40
- Fix PEP8 · 06402481
  Floreal Cabanettes authored 6 years ago
  
  06402481
- Fix: allow sample files to be a link · 8526a526
  Floreal Cabanettes authored 6 years ago
  
  8526a526
Jul 06, 2018
- Fix reduces repeatmasker runtime, reset it to default · 84e27dab
  Floreal Cabanettes authored 6 years ago
  
  84e27dab
- Update popsim submodule · 4824edb4
  Floreal Cabanettes authored 6 years ago
  
  4824edb4
- - change filter to noFilter (by default filtering is done) · cea5dca8
  Thomas Faraut authored 6 years ago
  
  - simplify gcmaskbed and lcmaskebed (erferencebundle) - Update submodule snakecnv/lib to latest
  cea5dca8
- Fix repeatmasker mem req + fix cluster spec · 91c55658
  Floreal Cabanettes authored 6 years ago
  
  91c55658
- Fix node specifications · f431e49e
  Floreal Cabanettes authored 6 years ago
  
  f431e49e
- Fix requirements · 3f5dbe9c
  Floreal Cabanettes authored 6 years ago
  
  3f5dbe9c
Jul 04, 2018
- Slurm: force to use only 1 node per job · d21b8d57
  Floreal Cabanettes authored 6 years ago
  
  d21b8d57
- Update to latest popsim · b4ea21b3
  Floreal Cabanettes authored 6 years ago
  
  b4ea21b3
- simply removing unused tmp = os.path.join() in run_refbundle · 4aef9eb6
  Thomas Faraut authored 6 years ago
  
  4aef9eb6
- OK encore un problème de pull push · fdca0407
  Thomas Faraut authored 6 years ago
  
  Merge branch 'master' of forgemia.inra.fr:genotoul-bioinfo/cnvpipelines
  fdca0407
- nstrech bug corrected · 8b7c6c80
  Thomas Faraut authored 6 years ago
  
  8b7c6c80
- Fix nstretches rule · a236335e
  Floreal Cabanettes authored 6 years ago
  
  a236335e
Jul 03, 2018
- Update git clone URL · 3019a2de
  Floreal Cabanettes authored 6 years ago
  
  3019a2de
- Improve documentation · 2b8c7a4f
  Floreal Cabanettes authored 6 years ago
  
  2b8c7a4f
- Fix regex for chromosomes · 7ca6bb2c
  Floreal Cabanettes authored 6 years ago
  
  7ca6bb2c
- Prevent crash if no valid chromosomes found in the reference file · 271ff454
  Floreal Cabanettes authored 6 years ago
  
  271ff454
- Update doc + remove delly from conda requirements · 066c04d5
  Floreal Cabanettes authored 6 years ago
  
  066c04d5
- Remove message from snk (done in the wrapper · 121d676e
  Floreal Cabanettes authored 6 years ago
  
  121d676e
- Allow regex in chromosomes names · 1fadc66f
  Floreal Cabanettes authored 6 years ago
  
  1fadc66f
- Add warning if we filter chromosomes out · eb4962b8
  Floreal Cabanettes authored 6 years ago
  
  eb4962b8
- Fix: simulation: refbundle/reference.fasta must exists before run snakemake workflow · ad942b7e
  Floreal Cabanettes authored 6 years ago
  
  ad942b7e
- Fix typo · 3931aa2e
  Floreal Cabanettes authored 6 years ago
  
  3931aa2e
- Make simulation compatible with the new implementation · 4d9e3411
  Floreal Cabanettes authored 6 years ago
  
  4d9e3411

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