From cd9d7c85523ce4fd616a24760eb8ea386ee70e5e Mon Sep 17 00:00:00 2001
From: Floreal Cabanettes <floreal.cabanettes@inra.fr>
Date: Fri, 3 Aug 2018 13:43:56 +0200
Subject: [PATCH] Make command much readable
---
snakecnv/tools/pindel.snk | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/snakecnv/tools/pindel.snk b/snakecnv/tools/pindel.snk
index bbdf1e4..fdfdab3 100644
--- a/snakecnv/tools/pindel.snk
+++ b/snakecnv/tools/pindel.snk
@@ -67,7 +67,7 @@ rule mergepindelbatches:
threads:
1
shell:
- "mergepindelbatches.py {output.D} {input.D} 1>{log.stdout} 2>{log.stderr}; "
- "mergepindelbatches.py {output.INV} {input.INV} 1>>{log.stdout} 2>>{log.stderr}; "
- "mergepindelbatches.py {output.TD} {input.TD} 1>>{log.stdout} 2>>{log.stderr}; "
+ "mergepindelbatches.py {output.D} {input.D} 1>{log.stdout} 2>{log.stderr};\n"
+ "mergepindelbatches.py {output.INV} {input.INV} 1>>{log.stdout} 2>>{log.stderr};\n"
+ "mergepindelbatches.py {output.TD} {input.TD} 1>>{log.stdout} 2>>{log.stderr};\n"
"rm -rf {wildcards.batch}/pindel/{wildcards.chrom}"
\ No newline at end of file
--
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