From 7ca9e3d67d4bf2d00b029a403b63f82d946639b9 Mon Sep 17 00:00:00 2001
From: Floreal Cabanettes <floreal.cabanettes@inra.fr>
Date: Mon, 19 Mar 2018 15:30:29 +0100
Subject: [PATCH] Fix functions
---
snakecnv/lib/svsnakemake_utils.py | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/snakecnv/lib/svsnakemake_utils.py b/snakecnv/lib/svsnakemake_utils.py
index 23abff8..4befa7c 100644
--- a/snakecnv/lib/svsnakemake_utils.py
+++ b/snakecnv/lib/svsnakemake_utils.py
@@ -69,7 +69,7 @@ class SnakemakeUtils:
def get_inputs_extracted(self, wildcards):
inputs = []
- for sample in self.samples[wildcards.batch]:
+ for sample in self.samples[int(wildcards.batch)]:
inputs.append("{batch}/extraction/{chrom}/{sample}.bam".format(
batch=wildcards.batch, chrom=wildcards.chrom, sample=sample
))
@@ -77,6 +77,6 @@ class SnakemakeUtils:
def get_inputs_bams(self, wildcards):
inputs = []
- for sample in self.samples[wildcards.batch]:
+ for sample in self.samples[int(wildcards.batch)]:
inputs.append("data/bams/{sample}.bam".format(sample=sample))
return inputs
--
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